Chondrocystis sp. NIES-4102: NIES4102_01800
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Entry
NIES4102_01800 CDS
T05085
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
chon
Chondrocystis sp. NIES-4102
Pathway
chon03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
chon00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NIES4102_01800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chon03021
]
NIES4102_01800
03400 DNA repair and recombination proteins [BR:
chon03400
]
NIES4102_01800
Enzymes [BR:
chon01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NIES4102_01800
Transcription machinery [BR:
chon03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NIES4102_01800
DNA repair and recombination proteins [BR:
chon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NIES4102_01800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
BAZ43181
LinkDB
All DBs
Position
193389..196700
Genome browser
AA seq
1103 aa
AA seq
DB search
MTNLTYNLLPDLIEIQRSSFRWFLEEGLIEELNSFSPITDYTGKFELHFMGENYRLKEPK
YSMEEAKRRDSTYNVQVYVPTRLIDKESGEIKEMEVFVGDLPLMTDRGTFIINGAERVIV
NQIVRSPGVYYKAETDKNGRRTYSASLIPNRGAWLKFETDKNGLVWVRIDKTRKLSAQVL
LKAIGLSDNEIMDGIRHPDFYQKTLDKEGNPTEEEALLELYRKLRPGEPPTVSGGQQLLE
SRFFDPKRYDLGRVGRYKLNKKLRLTVPDTTRVLTTTDILAAVAYLINLEFDGGSTDDID
HLGNRRVRSVGELLQNQVRVGLNRLERIIRERMTVSEANSLTPAALVNPKPLVAAIKEFF
GSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGFAVRDIHPTQYGRICPVETPEG
PNAGLIGSLATYARVNPYGFIATPYYRVENGRVFKEAEPVYLTADEEDDMRVAPGDVATD
ENGYILGETIAIRYRQEFSTCAPDEVDYVAISPVQIVSVATSLIPFLEHDDANRALMGSN
MQRQAVPLLRPERPLVGTGLEAQTARDSGMVVVSRTHGTVTYVDANEVRVRVETGNNGLY
APEPGEEITYKLQKYQRSNQDTCLNQRPLVYAGEDVVPGQVLADGSSTEGGELALGQNVL
VAYMPWEGYNYEDAILISERLVYDDVYTSIHVEKFEIEARQTKLGPEEITREIPNVGEDA
LRNLDERGIIHIGAWVEAGEILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRVP
NGEKGRVVDVRVFTREQGDELPPGANMVVRIYVAQKRKIQVGDKMAGRHGNKGIISRILP
IEDMPYLPDGTPIDIALNPLGVPSRMNVGQVFECLLGWAGENLAMRFKIMPFDEMYGKEA
SRETVHGKIQEAARKPGKGWVYDEENPGKIQVFDGRTGEPFDRPITVGKAYMLKLVHLVD
DKIHARSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAYGAAYTLQELLTVKSDDMQG
RNEALNSIVKGKPIPRPGTPESFKVLMRELQSLGLDIAVHKLEAVEDGSSRDVEVDLMAD
TPRRTPNRPTYESLQREETAEEV
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgactaatctgacttacaatttgctaccagacttaattgaaattcaacgctctagtttt
cgttggtttctagaagagggtttaatagaagagcttaatagtttttcaccgattaccgac
tatacaggtaaatttgaactacatttcatgggagaaaactatcgcctcaaagagccaaaa
tactcaatggaggaagcaaaacgccgtgatagtacctacaatgtgcaggtgtatgtcccc
actcgcctaatagacaaagaaagtggcgaaatcaaagaaatggaagtattcgttggtgat
ttgcctttgatgacagatcgtggcacttttattattaatggtgcagaaagagtcattgtc
aaccagatagtgcgatcgcctggagtatattacaaagcggaaacagataaaaatggtcgt
cgaacctattcagcttccttaattcccaaccgtggagcttggttaaaatttgaaacagat
aaaaatggtttagtctgggtaagaatcgataaaactcgcaaactttccgcccaagtttta
ctcaaagctataggtttaagtgataacgaaattatggatggaattcgccatcccgacttt
taccaaaaaaccttagataaagagggtaatcctaccgaagaagaagcattactagaacta
tatcgcaagctacgtcctggtgaacctcctactgtaagtggtggtcaacagttattagaa
tcacgctttttcgatcctaaacgttacgatttaggaagagttggacgctataaactcaac
aaaaaacttcgattaactgttcctgataccaccagagttctaactactaccgatattttg
gctgcggttgcctacctaattaacttagaatttgatggtggtagtaccgatgatatcgac
cacttaggaaatcgtcgggtgcgctctgttggggaactattacaaaaccaagtaagagtc
ggtctaaatcgcttagaaagaattattcgtgagcgtatgactgttagtgaagccaatagt
ctaactccagcagctttagttaaccccaaacccttagttgcagcaattaaagagtttttt
ggctcttctcagctttcccaatttatggatcaaaccaatcccctagctgagttaactcac
aaacgtcgtctttcggctttaggccctggaggattaactagagaaagagcaggttttgca
gttagagatatccatcctactcaatatggtcgcatttgtcccgtagaaactcctgaaggc
cctaacgcaggactaataggttctttagcaacttatgcacgtgtcaacccctatggcttt
atcgccacaccctactatcgggtagaaaacggtcgtgtgttcaaagaagccgaacctgtt
tacctcactgccgatgaggaagacgatatgagagttgcaccaggagacgttgccactgat
gaaaatggctatattttaggtgaaactattgctattcgttatcgtcaggaattttccacc
tgcgcccctgatgaagtagactatgtggcgatttcacctgtacaaatcgtttctgttgct
actagtttgattccctttttagaacatgatgatgctaaccgcgccttaatgggttctaat
atgcagcgtcaagctgttcctctcctacgtccagagcgtcctctagtcggtacaggttta
gaggcacaaacagcccgtgactcggggatggtagtagtatctagaactcatggaactgtt
acctatgtggatgccaatgaagttagagtaagggtagaaacaggcaataatggattatac
gctccagagcctggagaagaaataacctataaattgcaaaaatatcaacgatctaaccaa
gatacctgtctaaatcagcgacctttagtttatgcaggggaagatgttgtacctggtcaa
gttttagctgatggttcatcaaccgaaggaggggaattagcattaggacaaaacgtttta
gtagcttatatgccttgggaaggatataactacgaagatgcgattctcattagtgaaaga
ttggtatatgacgatgtatacaccagtattcacgtagaaaaatttgaaatagaagccaga
caaactaaattagggccagaagaaattactagagaaattcctaacgttggagaagatgct
ctacgtaatcttgatgaacgaggcatcatacatattggtgcttgggtagaagctggagaa
attctagtaggaaaagtcacacccaaaggcgaatctgatcaaccaccagaagaaaaacta
ctgcgagcaatctttggggaaaaagccagagatgtaagagataattccctgagagttcct
aatggtgaaaaaggacgagtggttgatgttagggtcttcactcgcgaacaaggagatgaa
ttacctcctggggctaatatggtagtcaggatctacgttgcacaaaaacgtaagatacaa
gtgggtgataaaatggctggtcgccacggtaataaagggattatttcgcgtatcttacct
attgaagatatgccctatctacccgatggtactcctatagatattgccctaaatccatta
ggtgttccctcccgtatgaatgtgggtcaagtatttgaatgtcttctaggatgggctggg
gagaacttggctatgcgctttaaaatcatgccttttgatgaaatgtatggtaaagaagca
tctagagagactgtgcatgggaaaatacaagaagctgctcgtaaacctggtaaaggatgg
gtatacgatgaagaaaacccaggcaaaattcaagtatttgatgggcgtactggagaacct
tttgatcgtccgataactgtgggtaaagcttatatgctcaagctggttcatttagtagat
gataaaatccatgctcgttctacaggcccttactccttagttactcaacagccattaggt
ggtaaagctcaacaaggtggacaacgctttggagaaatggaagtatgggcattggaagcc
tacggtgcagcctataccctccaagagttactaacagttaaatccgatgatatgcaggga
cgcaatgaagctctcaattctattgttaaaggtaagccaattcctcgtcctggtacaccc
gaatccttcaaggtattgatgagagaattacagtcattaggcttagatattgctgtacat
aaattagaagctgtagaagatggtagtagccgtgatgtagaagttgatttaatggcagat
actccacgtcgtactcctaaccgacctacttatgaatctttacaaagagaggaaactgct
gaggaagtgtag
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