Chromobacterium phragmitis IIBBL 112-1: DK842_10415
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Entry
DK842_10415 CDS
T05549
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
chri
Chromobacterium phragmitis IIBBL 112-1
Pathway
chri03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
chri00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DK842_10415 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chri03021
]
DK842_10415 (rpoC)
03400 DNA repair and recombination proteins [BR:
chri03400
]
DK842_10415 (rpoC)
Enzymes [BR:
chri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DK842_10415 (rpoC)
Transcription machinery [BR:
chri03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DK842_10415 (rpoC)
DNA repair and recombination proteins [BR:
chri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DK842_10415 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Biotin_lipoyl_2
Ead_Ea22
Motif
Other DBs
NCBI-ProteinID:
AXE30280
UniProt:
A0A344UK76
LinkDB
All DBs
Position
2199798..2203988
Genome browser
AA seq
1396 aa
AA seq
DB search
MKALLDLFKQVTQEEEFDAIKIGIASPDKIRSWSYGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAFVVTDPGMTPLQYRQLLTEEDFLDKEDQYGEEFVAMM
GAEAVKELLKKLDLDSEIETLRRELEATNSDTKIKKIAKRLKVLEAFQRSGMKPEWMILE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPDIIVRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFHKLEVMGLASTIKAAKKLVEQEVPEVWDILEDVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLATNNVLSPANGEPIIVPSQDIVLGLYYMTRDKVNGKGEGMVFADTKEVHRAYETR
QVELATRITVRLREWEKDEQGEFQPVIKRYNTTVGRAILSDILPKGLPFEHINKALKKKE
ISKLINVSFRRCGIRDTVIFADQLMYTGFAYSTRGGISICVDDMQIPAKKVELLGEANKE
VKEIEEQYRQGLVTQGERYNKVVDIWGRTGDKIAKAMMDELSKQKVLDREGKEVDQESFN
SIYMMADSGARGSAAQIKQLAGMRGLMAKPDGSIIETPITANFREGLTVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVVVEDNCGTTNGFTMKAVLQGGDVIEALRDRIL
GRVTAVDVVDPSTGETVIEAATLLDEQMVDLIDSLGIDEVKVRTAITCDTRYGLCAKCYG
RDLARGKQVNAGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRNAAASQVEGKSNGTVRF
SSQMRYVANTKGELIVITRSGEVVIHDDMGRERERHKVPYGATLMVTDGLQIKAGTVLAT
WDPHTRPIITEYAGRVKFENVEEGNTVAKQTDEVTGLSTLVVIDPKRRAGSQSKMLRPLV
KLLDDNGNEVKLAGSDASVSITFQVGAIITVRDGQDVGKGEVLARIPQESSKTRDITGGL
PRVAELFEARSPKDAGMLAEVTGTVSFGKDTKGKQRLIITDLEGNGYENLIPKDKHVLVH
DGQVVNRGESIVDGPVDPHDILRLQGIEALARYIVQEVQEVYRLQGVKINDKHIEVIIRQ
MLRRVVISDSGDTEFIQGEQVERADVLEMNDKMMAEDKECAQYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKKDDLRGLKENVIVGRLIPAGTGLAYHRTRRRQNLGLDAA
ESQLFDPAPAALESDD
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctttgctcgatctctttaagcaagttacgcaagaagaagagtttgatgcgatc
aagatcggcatcgcctcgcctgacaagatccgttcctggtcttatggcgaagtcaagaag
ccggaaacgatcaactaccgcaccttcaagccggagcgcgacggcctgttctgcgcgcgc
atcttcggaccggtcaaggattacgagtgcttgtgcggcaagtacaagcgcctgaagcat
cgcggcgtgatctgcgagaagtgcggcgtggaagtgacgctgtccaaggtgcgccgcgag
cgcatgggccacatcgagctggccagcccgaccgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtgctggacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcgttcgtcgtgaccgatccgggcatgaccccgctgcaataccgccagctgttg
accgaagaggacttcctggacaaggaagaccagtacggtgaagaattcgtcgccatgatg
ggcgccgaggcggtcaaggagctgctgaaaaagctggacctggacagcgagatcgaaacc
ctgcgccgcgagctggaagccaccaactccgacaccaagatcaagaagatcgccaagcgc
ctgaaggtgctggaggcgttccagcgttccggcatgaagccggagtggatgatcctggaa
gtgctgccggtgctgccgccggagctgcgtccgctggtgccgctggacggcggccgcttc
gcgacctccgacctgaacgacctgtaccgccgcgtcatcaaccggaacaaccgtctgaag
cgcctgctggagctgcgcgcaccggacatcatcgtgcgcaacgaaaagcgtatgctgcag
gaatcggttgactcgctgctggacaacggccgtcgcggcaaggcgatgaccggcgccaac
aagcgtccgctgaagtcgctggccgacatgatcaagggcaagggcggtcgtttccgtcag
aacttgctgggtaagcgcgtcgactactccggtcgttccgtgatcaccgtgggcccgacc
ctgcgtctgcatcagtgcggcctgccgaagaagatggcgctggaattgttcaagcctttc
atcttccacaagctggaagtgatgggcctggcctccaccatcaaggcggccaagaagctg
gtcgagcaggaagtgccggaagtgtgggacatcctggaagacgtgatccgcgagcatccg
gtgctgctgaaccgcgcgccgaccctgcaccgtctgggcatccaggcgtttgagccggtg
ctgatcgaaggcaaggccatccagctgcacccgctggtttgcgcggcgttcaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgtcgctggaagcgcagatggaagcg
cgcaccctgatgctggccaccaacaacgtgctgtccccggccaacggcgaaccgatcatc
gtgccgtcgcaggatatcgtgttgggtctgtactacatgacccgcgacaaggtaaacggc
aagggcgaaggcatggtgttcgcggacactaaggaagtgcatcgcgcttacgaaacccgt
caggtcgaactggctacccgcatcaccgtccgcctgcgcgagtgggaaaaggacgaacag
ggcgagttccagccggtgatcaagcgttacaacaccaccgttggccgcgcgatcctgtct
gacatcctgccgaagggcctgccgttcgagcacatcaacaaggcgctgaagaagaaggaa
atctcgaaactgatcaacgtttcgttccgtcgttgcggcatccgcgacacggtgatcttc
gccgaccagctgatgtacaccggtttcgcctactccacccgcggcggcatctcgatttgc
gtggacgacatgcaaatcccggccaagaaggtcgagctgctgggcgaggcgaacaaggaa
gtcaaggaaatcgaggaacagtaccgtcaaggtctggtgacccagggcgaacgctacaac
aaggtagtggacatctggggccgcaccggcgacaagatcgccaaggccatgatggacgag
ctgtccaagcagaaggtgctggaccgcgaaggcaaggaagtggaccaagagtccttcaac
tccatttacatgatggccgactcgggcgcgcggggttccgcagcccagatcaagcagctg
gccggcatgcggggtctgatggcgaagccggacggctcgattatcgaaacgccgattacc
gccaacttccgcgaaggcctgaccgtactgcagtacttcatctccactcacggcgcgcgt
aagggtctggcggataccgccttgaagaccgcgaactccggttacctgacgcgtcgtctg
gtcgacgtgacccaggatctggtggtggtggaagacaactgcggcacgaccaacggcttc
accatgaaggccgtgctgcaaggcggcgacgtgatcgaagcgctgcgcgaccgcatcctc
ggccgcgtgaccgcggttgacgtggtggatccgtccaccggcgaaaccgtgattgaagcc
gccacgctgctggacgagcagatggtcgacctgatcgacagcctcggcatcgacgaagtc
aaggttcgcaccgccatcacttgcgacacgcgctacggtttgtgcgccaagtgctacggc
cgcgatctggcgcgcggcaagcaagtgaacgccggcgaagccgtgggcgtgatcgccgct
cagtcgatcggcgaaccgggcacccagctgaccatgcgtaccttccacatcggtggcgcg
gcgtctcgaaacgcggccgccagccaggtggaaggcaagtcgaacggcaccgtccgcttc
tccagccagatgcgctatgtggcgaacaccaagggcgagctgatcgtcatcacccgctcc
ggcgaagtggtgatccacgacgacatgggccgcgagcgcgagcgccacaaggtgccgtac
ggcgcgaccctgatggtgaccgacggcctgcagatcaaggccggcacggttctggccacc
tgggacccgcacactcgtccgatcatcaccgagtacgctggccgcgtgaagttcgagaac
gtggaagaaggcaacaccgtagccaagcagaccgacgaagtgaccggcctgtccacgctg
gtggtcatcgatccgaagcgccgcgccggttcgcagtccaagatgctgcgcccgttggtg
aagctgctggacgacaacggcaacgaagtgaagctggccggttccgacgcgtcggtgtcg
atcaccttccaggtgggtgccatcatcaccgtgcgcgatggtcaggacgtgggcaagggc
gaagtgctggcccgcatcccgcaagaatcgtccaagacccgcgacattaccggtggtctg
ccgcgcgtggccgagctgttcgaagcccgttcgccgaaggatgccggcatgctggccgag
gtgaccggcaccgtttcgttcggcaaggacaccaagggcaagcagcgcctgatcatcacc
gacctggaaggcaacggttacgaaaacctgatcccgaaggacaagcacgtgctggttcac
gacggccaggtggtgaaccgcggcgaatccatcgtcgacggtccggtcgatccgcacgac
atcctgcgtctgcagggcatcgaggcgctggctcgctacatcgttcaggaagtgcaggaa
gtgtaccgactgcagggcgtgaagattaacgacaagcacatcgaggtgatcattcgccag
atgctgcgtcgcgtcgtgatctccgacagcggcgacaccgagttcatccagggcgagcag
gtggaacgcgccgacgtgctggaaatgaacgacaagatgatggccgaggacaaggaatgc
gcgcagtacgaaaacgtgctgctgggcatcaccaaggcctcgctgtcgaccgactcgttc
atctccgcggcttccttccaggaaaccacgcgcgtgctgaccgaagcggccatcatgggc
aagaaggacgacttgcgcggtttgaaggaaaacgtgatcgtcggccgtctgattccggcc
ggcaccggtctcgcctaccatcgcacccgccgtcgccagaacctgggtctggacgccgcc
gagtcgcagctgttcgatccggctccggccgcgctggaaagcgacgactaa
DBGET
integrated database retrieval system
