Chryseobacterium sp. KCF3-3: KCF3NO3_20820
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Entry
KCF3NO3_20820 CDS
T11022
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
chrk Chryseobacterium sp. KCF3-3
Pathway
chrk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
chrk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KCF3NO3_20820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chrk03021
]
KCF3NO3_20820
03400 DNA repair and recombination proteins [BR:
chrk03400
]
KCF3NO3_20820
Enzymes [BR:
chrk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KCF3NO3_20820
Transcription machinery [BR:
chrk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KCF3NO3_20820
DNA repair and recombination proteins [BR:
chrk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KCF3NO3_20820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
HHH_XRCC3_RpoA
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
BFO66099
LinkDB
All DBs
Position
2387064..2388059
Genome browser
AA seq
331 aa
AA seq
DB search
MAILQFIKPDKVILLNSDEFKGQFEFRPLEPGFGLTIGNALRRVLLSSLEGYAISSIKIE
GVEHEFSTIPGVIEDVTEIILNLKQVRLKAAAEGQANEQVVAKVSGQTVITAGDLGKSIN
GFEVLNPDLLICNLNSDVTFEITFNIEKGRGYVPSEQNKSNNAPIGTIAIDSIFTPIKKV
QYSIENYRVEQKTDYEKLVLDIETDGSISPQNALTEASKILIYHFMLFSDERITLETEAV
KASIQYDEETLHTRQLLKSKLADMDLSVRALNCLKAAEVETLGELVSYSKSDLMKFRNFG
KKSLTELEELVHSKGLNFGFDVAKYKLDADK
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atggcaattttacaattcataaaacccgataaagtaattttacttaactctgatgaattt
aaaggtcaatttgaattcagacctttagaaccaggtttcgggcttacaatcggtaatgct
ttgagaagagtgttgctttcttctctggaaggatacgctatttcatctatcaaaatagaa
ggtgtagagcacgaattttcaactattccaggagtaatcgaagacgttaccgaaattatt
cttaaccttaagcaggtgagattaaaagctgcagcagaaggccaggctaacgagcaggtt
gttgctaaagtttcaggtcaaacggttattactgctggtgatttaggaaagtctatcaat
ggatttgaggttctgaacccagatttattgatctgcaacctaaacagtgatgtaactttc
gaaattactttcaatattgaaaaaggaagagggtatgttccttctgaacaaaataagtca
aacaatgctcctattggaactattgctattgactctattttcacgccgatcaagaaagta
caatacagcattgaaaattatcgtgtagagcaaaaaacagactacgaaaaacttgtatta
gatatagaaactgacgggtctatcagccctcagaatgctttaactgaagcttctaagata
ttaatttatcacttcatgttattctccgatgagagaatcactcttgaaactgaagccgta
aaagcatctatccagtacgatgaagaaactcttcacacaagacaacttcttaagtctaaa
ttagcagatatggatctttctgtaagagcccttaactgtctaaaagcagctgaagtagaa
actcttggagaactggtttcttacagtaagtctgatttgatgaaattcagaaattttggt
aaaaaatctttgacagaactagaagaattagtgcattcaaaaggtcttaacttcggtttc
gacgttgcaaaatataagttagacgctgataaataa
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