Chryseobacterium sp. POL2: G6R40_07275
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Entry
G6R40_07275 CDS
T11017
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
chrp Chryseobacterium sp. POL2
Pathway
chrp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
chrp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G6R40_07275 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chrp03021
]
G6R40_07275 (rpoB)
03400 DNA repair and recombination proteins [BR:
chrp03400
]
G6R40_07275 (rpoB)
Enzymes [BR:
chrp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G6R40_07275 (rpoB)
Transcription machinery [BR:
chrp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G6R40_07275 (rpoB)
DNA repair and recombination proteins [BR:
chrp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G6R40_07275 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
QIG89481
LinkDB
All DBs
Position
complement(1592935..1596762)
Genome browser
AA seq
1275 aa
AA seq
DB search
MSKTQANSKIKGTERINFSSAKGKIVTPDFLDIQIQSFKDFFQLDTLPEQRLNESLYGTF
QENFPITDSRNQFVLEFLDYLVDSPRYSIDECVERGLTYSVPLKARLKLYCTDPEHEDFQ
TVVQDVYLGPVPYMTPSGSFIINGAERVIVTQLHRSPGVFFGQTYHANGTKLYYSRIIPF
KGSWMEFTTDINSVMYAYIDRKKKLPLTTLLRAIGYESDKEILQIFDLAEEVKVNKANLK
KVQGRTLAARVLNTWFEDFVDEDTGEVVSIERNEIILDRETVLEKEHLDIILESGVKTIL
IHNENSNEFSIIQNTLQKDPTNSEKEAVEYIYRQLRNADAPDEETARGIIEKLFFSEQRY
SLGEVGRYRLNKKLGLNIAEDIQVLTKEDIISIVKHLIELVNSKAEVDDIDHLSNRRIKT
VGEQLSGQFGVGLSRIARTIKERMNVRDNEIFTPLDLVNAKTLTSVINSFFGTNQLSQFM
DQTNPLSEITHKRRLSALGPGGLSRERAGFEVRDVHHTHYGRICPIETPEGPNIGLISSL
GIYAKINQLGFIETPYRKVENGKVDLDSAPIYLNAEDEEDKVIAQANVDMKDDGAIATER
VIARLDGDYPVVEPQQVDLIDVAPNQISGISASLIPFLEHDDANRALMGSNMMRQAVPLL
RAQAPIVGTGLEKQVARDSRILINAEGTGTVEYVDANKITIKYDRNEDQDLVSFDSGTKS
YKLTKFRKTNQSTTITLKPIVRVGDVVEKGQVLCEGYATENGELALGRNLVVAFMPWKGY
NFEDAIVINEKVVREDWFTSIHVDEYSLEVRDTKLGMEELTADIPNVSEEATKDLDENGM
IRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKADSSLRGVVIN
KKLFARNIKDKKKRSEEKIKLEEIENTYKAKFDDLRNTLIEKLNILVSGKTSQGVKNDLE
EEVIGKGVKFTQKLLTSVEDYVNISGSDWTVDADKNELIKQLIHNYKIKFNDIQGVKNRE
KFALSIGDELPAGIMKLAKVYIAKKRKLNVGDKMAGRHGNKGIVSRIVREEDMPFLEDGT
PVDIVLNPLGVPSRMNIGQIYETVLGWAGQKLGLKFATPIFDGAELDQITEYTEKAGLPA
YGNTYLYDGGTGDRFTQPATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFG
GQRFGEMEVWALEAFGASNILREILTVKSDDVIGRAKTYEAIAKGEAMPEPGIPESFNVL
LHELQGLGLDVRLEE
NT seq
3828 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaacacaggcaaattcaaaaattaaagggaccgaaagaatcaacttttcttca
gcgaaaggtaagattgttacgcctgactttttggatatccaaatccagtctttcaaggat
tttttccagctagacacgcttcctgaacaacgtcttaatgaatcactttatggtacgttc
caggaaaatttcccaattacagactctagaaaccaattcgttttagagttcttagactat
ttagtggattctccacgttattctatcgacgagtgcgttgagagaggtttgacgtatagc
gttccattaaaagctagattgaaattatattgtacagatccagaacacgaggatttccaa
acggttgtgcaagacgtttatcttggaccggtaccttatatgacgccttcagggtctttc
attattaatggtgctgagcgtgttattgtaacgcaattgcacagatctccaggtgtattc
tttggtcaaacttatcacgcgaacggtacgaagttgtattattcaagaattatccctttc
aaaggatcttggatggagtttacaaccgatatcaacagcgtaatgtatgcgtatatcgac
cgtaagaaaaagttacctttaacaactttactaagagctattggttacgaatctgataaa
gaaattcttcagatttttgatttggcagaagaggttaaagttaacaaagcaaaccttaaa
aaagtacaaggtagaactttggcagcgagagttttgaacacttggttcgaggatttcgta
gacgaagatacaggtgaggttgtttctatcgaaagaaatgaaattatcttagaccgtgag
actgttctagaaaaagaacatcttgatattattttggaatctggcgttaagactatctta
atccacaacgaaaattctaacgaattctcaatcatccagaatacattacaaaaagaccca
actaactcagagaaagaagcggttgaatatatctaccgtcaacttcgtaatgcagatgca
ccagatgaggaaacagcaagaggaattattgaaaaattattcttctcagagcaacgttat
tctctaggtgaagttggtcgttacagattgaacaaaaaattaggtcttaacatcgccgaa
gatattcaggttttaacaaaagaagatattatctctatcgttaaacacttgatcgagttg
gttaactctaaagctgaagttgatgatattgaccacttatctaacagaagaattaaaact
gttggtgagcaattgtcaggacaattcggtgttggtctttcaagaattgcaagaacaatt
aaagaaagaatgaacgttcgtgataacgaaatttttacaccgctagatcttgttaatgct
aaaacattgacatcagttatcaattcattctttggtaccaaccagctttctcagttcatg
gaccaaaccaacccactttcagaaattacgcacaagcgtagactttctgcattagggcct
ggtggtttatcaagagaaagagccggtttcgaggttcgtgacgttcaccatacgcactat
ggtcgtatttgtcctatcgaaacgccagaaggaccaaacattggtttgatctcttcatta
gggatctatgcgaaaattaaccaattaggtttcatagaaaccccttaccgtaaagtagaa
aacggaaaagtggatcttgatagcgctccaatttatcttaatgctgaagatgaagaagat
aaagtaattgcgcaggctaacgtagatatgaaggatgatggtgctatcgctacagaaaga
gttattgctcgtctagatggtgactatccagttgttgagcctcagcaagttgatctaatc
gatgtggcacctaaccagatttctggtatttcggcttcgttaattccattcttggaacat
gatgatgcgaaccgtgcgctgatgggatctaacatgatgcgtcaggctgttccacttctt
agagcccaagcaccaatcgtgggtacaggtctagagaagcaagttgctagagattctaga
atcttaatcaatgcggaaggtacaggtactgtggagtatgttgatgctaacaagattaca
attaaatatgacagaaacgaagatcaagatttggtatctttcgattctggaacgaaatca
tataaattaactaagtttagaaaaaccaaccagagtacaaccattactttgaagccaatc
gtaagagtcggtgacgtcgtagagaaaggtcaagttctttgtgaaggctacgcaactgaa
aatggtgaattagcacttggtagaaacttggtagttgccttcatgccttggaaaggttac
aacttcgaggatgccattgtgattaatgagaaagtagttcgtgaggactggtttacgtca
atccacgttgatgaatattctcttgaggttcgtgataccaaattaggtatggaagaactg
acagcagatatccctaacgtttctgaagaggctactaaagaccttgacgaaaacggtatg
atccgtattggtgcagaagttaagcctggtgacattttgatcggtaagattacaccaaaa
ggtgagtcggatcctacaccagaagaaaaactgcttcgtgccatcttcggtgataaagcg
ggggatgttaaagatgcttctcttaaagcagattcttctcttagaggagttgttatcaac
aagaagttgttcgctagaaacatcaaagacaaaaagaaaagatctgaagagaaaattaaa
cttgaagaaatcgaaaatacttacaaagcgaaattcgatgatttaagaaatacattaatc
gaaaaacttaacattttagtatcaggaaaaacatctcaaggtgttaaaaatgacctagaa
gaagaagtcatcggtaaaggtgttaaattcactcagaagcttttaacaagtgttgaggat
tatgttaacattagcggttcggactggacggttgatgctgacaaaaacgaattaatcaaa
caattaattcacaactataaaattaaattcaacgatatccaaggtgtgaaaaacagagaa
aaattcgcactttctatcggagacgagcttcctgcaggtatcatgaagttggctaaagtt
tacatcgctaaaaagcgtaaacttaatgttggtgataagatggcaggacgtcacggtaac
aaaggtatcgtatctagaatcgttcgtgaagaagatatgccgttcttagaagacggaacg
ccagtagatatcgtattgaatccacttggggtaccttctcgtatgaacatcggacaaatc
tatgaaactgtattaggttgggccggtcaaaagttaggattgaaattcgcgacgcctatc
ttcgatggtgcagagcttgatcagattaccgagtacacagaaaaagcaggacttccagct
tatggtaatacttacctatatgatggtggcacaggagatagatttacacaacctgcaaca
gttggggtaatctatatgttgaagctgggacacatggttgatgacaagatgcacgcacgt
tctatcggaccatactcactaattacgcaacagccattaggaggtaaagcgcaattcggt
ggtcagcgtttcggagagatggaggtttgggcattagaagcattcggtgcatctaatatc
cttagagaaatcttgacagttaagtcggatgacgtgattggtagagcgaaaacgtatgaa
gcaatcgcgaaaggagaagcaatgccagaaccaggtattccggaatctttcaacgtatta
cttcacgaattgcaaggtcttggattagacgtaagacttgaggaataa
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integrated database retrieval system
