Chryseobacterium sp. 3008163: EAG08_14235
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Entry
EAG08_14235 CDS
T05679
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
chrs
Chryseobacterium sp. 3008163
Pathway
chrs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
chrs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EAG08_14235 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chrs03021
]
EAG08_14235 (rpoB)
03400 DNA repair and recombination proteins [BR:
chrs03400
]
EAG08_14235 (rpoB)
Enzymes [BR:
chrs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EAG08_14235 (rpoB)
Transcription machinery [BR:
chrs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EAG08_14235 (rpoB)
DNA repair and recombination proteins [BR:
chrs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EAG08_14235 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AYN01309
LinkDB
All DBs
Position
3080669..3084490
Genome browser
AA seq
1273 aa
AA seq
DB search
MSKTTAITKGNERINFSTAKGKIITPDFLDIQLESFKDFFQLDTLPEDRKKEGLHKTFQE
NFPITDSRNQFVLEFLDYLVDSPRYSIDECVERGLTYSVPLKARLKLYCTDPEHEDFQTV
VQDVYLGPVPYMTPSGSFIINGAERVIVTQLHRSPGVFFGQTYHANGTKLYYSRIIPFKG
SWMEFTTDINSVMYAYIDRKKKLPLTTLLRAIGFESDKDILQIFDLAEEVKVSKAALKKV
EGRTLAARVLNTWFEDFVDEDTGEVVSIERNEIILDRETILEKEHLDLILDAGVKSILIH
KENSNEFSIIQNTLQKDPTNSEKEAVEYIYRQLRNADPPDEETARGIIEKLFFSEQRYSL
GEVGRYRLNKKLSLNIPTTTEVLTKEDIIAIVRHLIELVNSKTDVDDIDHLSNRRIKTVG
EQLAGQFGVGLSRIARTIKERMNVRDNEIFTPLDLVNAKTLTSVINSFFGTNQLSQFMDQ
TNPLSEITHKRRLSALGPGGLSRERAGFEVRDVHHTHYGRICPIETPEGPNIGLISSLGI
YAKINSLGFIETPYRKVEGSTVDLHADPIYLNAEDEEDKVIAQANVELDDNGAFLTDRII
ARLDGDYPVVEPAQVNLIDVAPNQISGISASLIPFLEHDDANRALMGSNMMRQAVPLLKP
QAPIVGTGLEQQVAKDSRILINAEGNGIVEYVDADQITIKYERSDDEDLVSFESATKTYK
LTKFRKTNQSTTITLRPNVRVGETVHKGQVLCDGYATENGELALGRNLVVAFMPWKGYNF
EDAIVINEKVVREDWFTSIHVDEYSLEVRDTKLGMEELTADIPNVSEEATKDLDENGMIR
IGAEVKPGDIMIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKADSSLRGVVINKK
LFSRNIKDKKKRTEEKLKLEEIENTYKAKFDELRNTLIEKLNTLVSGKTSQGVTNDLDEE
IIGKGVKFTHKLLTSVEDYVNVSGADWTVDNDKNELIKQLIHNYKIKFNDIQGVKNREKF
AISIGDELPAGIMKLAKVYIAKKRKLNVGDKMAGRHGNKGIVSRIVREEDMPFLEDGTPV
DIVLNPLGVPSRMNIGQIYETVLGWAGQKLGMTFATPIFDGATLDQITEYTEKAGVPKFG
HTHLYDGGTGERFTQAATVGIIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQ
RFGEMEVWALEAFGAANILREILTVKSDDVIGRAKTYEAIAKGEAMPEPGIPESFNVLLH
ELQGLGLDVRLEE
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaacaaccgcaattactaaaggaaatgagagaattaatttctctacagcgaaa
ggaaaaatcattactccggatttcttagatatccagttagagtcattcaaagattttttc
caattagatacacttcctgaagacagaaagaaagaaggtttgcacaaaaccttccaagaa
aactttccaattaccgattctagaaaccaattcgttttggaattcttagactatttggta
gattcaccacgttactcaatcgatgagtgtgtggaaagaggtttaacgtattccgttcct
ctaaaagctagacttaaattatactgtacagatcctgagcatgaagattttcagactgtt
gtacaagatgtttatttaggtccggttccttacatgactccgtctggttcatttattatt
aatggagcagagcgtgtaatcgtaactcagttacacagatctccgggtgtattcttcgga
cagacttaccacgcaaacggaactaaattgtattattcaagaattatccctttcaaagga
tcttggatggaatttactaccgatatcaacagcgtaatgtacgcgtatatcgaccgtaag
aaaaaattacctttaactacattattaagagctatcggtttcgaatctgataaagacatt
cttcagatttttgaccttgcagaagaagtgaaagtttctaaagctgcacttaaaaaagta
gaaggtagaacattggctgcgagagtattgaatacttggttcgaagatttcgtagacgaa
gacactggagaagttgtttctattgaaagaaatgaaattatcctagacagagaaacgatt
cttgaaaaagaacatttagatcttattttggatgcaggtgtgaaatctatcttgattcac
aaagaaaattcaaacgaattctctatcatccagaatactttacaaaaagatccaaccaac
tcagaaaaagaagcggttgaatatatttatcgtcagttaagaaatgcagatccacccgat
gaggaaactgcaagaggaattattgaaaaattattcttctctgagcaaagatattcattg
ggtgaagtaggacgttatagactaaacaaaaagttaagcctaaacatcccaactacaact
gaagttcttacaaaagaagatatcattgcgattgtaagacacctaattgagttagtaaac
tcaaaaactgatgttgatgatattgaccacttatcaaacagaagaattaaaactgttggt
gagcaattagcaggacagttcggtgtaggtctttctagaattgcaagaacaatcaaagag
agaatgaacgttagagataacgaaatctttactccacttgaccttgttaatgcgaagact
ttaacatcagttattaactcattctttggtaccaaccagctttctcagttcatggaccaa
accaatcctctatcagaaatcacgcataagcgtagactttctgccctaggacctggtggt
ttatcaagagaaagagcaggtttcgaggtacgtgacgttcaccatactcactatggtcgt
atttgtcctatcgaaactcctgagggaccaaacattggtttgatctcatctttgggtatc
tatgcaaaaatcaattctttaggtttcatcgaaactccatatagaaaagtagaaggaagc
acggtagatttacatgctgatcctatttatcttaatgctgaagacgaagaagataaagta
attgctcaggcaaacgttgagttagacgataacggagctttcttaacagacagaattatt
gccagattagatggtgattatcctgtagttgagcctgctcaggttaatttgatcgacgtg
gcacctaaccagatttccggtatttcagcttcattgattccattcttggaacatgatgat
gcaaaccgtgcgttgatgggatcaaacatgatgcgtcaggcagttcctttgttgaagcca
caagctccaatcgtaggtacaggtctggaacaacaagttgcaaaagattctagaattttg
atcaatgctgaaggaaatggtatcgttgaatatgtagatgctgatcagattactattaaa
tatgaaagaagcgatgacgaagatttagtatcattcgaatctgctacgaaaacatataaa
ttaactaagttcagaaaaactaaccagagtacgacaattaccctaagaccaaacgtaaga
gtaggtgagacggtacataaaggtcaggttctttgtgacggttatgcaaccgaaaatgga
gaattagctcttggtagaaacttagtggtagccttcatgccttggaaaggatacaacttt
gaggatgcaatcgtaatcaacgaaaaagttgtacgtgaagactggtttacttctatccac
gtggatgagtattctcttgaagttcgtgataccaaattaggtatggaagaattgacagca
gatattccaaacgtatctgaagaagctacaaaagatcttgatgagaacggaatgatcaga
atcggtgctgaagtgaagcctggtgatatcatgattggtaagattactccaaaaggtgaa
tctgatcctactcctgaagagaaacttctaagagcaatctttggtgacaaagctggtgat
gtaaaagatgcttcattgaaagcagattcttcattaagaggtgttgtaatcaacaagaaa
ttgttctctagaaacattaaagataaaaagaaaagaactgaagaaaaacttaagcttgaa
gagattgaaaacacttacaaggctaagtttgacgagttgagaaatactttaatcgaaaaa
ttaaacactttagttagtggtaaaacttctcagggagttacgaatgacttagatgaagaa
attatcggtaaaggcgtgaaattcactcacaaattgttgacttcagtagaagattacgta
aacgttagcggtgcagattggacggttgacaacgataagaatgaattgatcaaacaattg
attcacaactacaaaatcaaattcaacgatattcaaggagttaaaaaccgcgagaaattc
gcaatttctatcggagatgaacttccagcagggatcatgaaattggctaaagtatatatc
gctaaaaaacgtaaactaaacgttggggataaaatggcaggacgtcacggtaacaaaggg
attgtttcgagaatcgttcgtgaagaagatatgccattcttagaagatggaacaccagta
gatatcgtattgaatccacttggggtaccttctcgtatgaacatcggacagatttatgaa
acagttcttggatgggctggtcagaaattggggatgacgttcgctacgccaatctttgat
ggggcaactcttgatcagattacagagtatactgagaaagcaggagttcctaaattcggt
cacactcacctttatgatggtggtaccggagaaagatttacacaagctgcaacggtaggt
attatctatatgttgaaacttgggcacatggtagatgacaaaatgcacgcacgttctatc
ggaccttactcattgattactcagcagccattaggaggtaaagctcagtttggtggtcag
agattcggagagatggaggtttgggctcttgaagcatttggagctgcaaatatcttgaga
gaaatcttgactgtgaagtcggatgacgtgattggtagagcaaaaacttatgaagcaatt
gcaaaaggtgaagcaatgcctgaaccaggtattccggaatctttcaacgtattacttcac
gagttacaaggtcttggattagacgtaagattggaagagtaa
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integrated database retrieval system
