Chryseobacterium sp. Y16C: MKS83_10395
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Entry
MKS83_10395 CDS
T11021
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
chrt Chryseobacterium sp. Y16C
Pathway
chrt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
chrt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MKS83_10395 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chrt03021
]
MKS83_10395 (rpoB)
03400 DNA repair and recombination proteins [BR:
chrt03400
]
MKS83_10395 (rpoB)
Enzymes [BR:
chrt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MKS83_10395 (rpoB)
Transcription machinery [BR:
chrt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MKS83_10395 (rpoB)
DNA repair and recombination proteins [BR:
chrt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MKS83_10395 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
UMQ44094
LinkDB
All DBs
Position
complement(2350375..2354196)
Genome browser
AA seq
1273 aa
AA seq
DB search
MSKTTATTRGDKRVNFSSAKGKIITPDFLDIQIESFSEFFQLDTLPEDRTNEGLYKTFQE
NFPITDSRNQFVLEFLDYLVDSPRYSIDECVERGLTYSVPLKARLKLYCTDPEHEDFQTV
VQDVYLGPVPYMTPSGSFIINGAERVIVTQLHRSPGVFFGQTYHANGTKLYYSRIIPFKG
SWMEFTTDINSVMYAYIDRKKKLPLTTLLRAIGYESDKDILQIFDLAEEVKVSKAALKKV
EGRTLAARVLNTWFEDFVDEDTGEVVSIERNEIILDRETILEKEHLDLILDAGVKSILIH
KENSNEFSIIQNTLQKDPTNSEKEAVEYIYRQLRNADPPDEETARGIIEKLFFSEQRYSL
GEVGRYRLNKKLGLNIPTTTEVLTKEDIIAIVRHLIELVNSKAEVDDIDHLSNRRIKTVG
EQLAGQFGVGLSRIARTIKERMNVRDNEIFTPLDLVNAKTLTSVINSFFGTNQLSQFMDQ
TNPLSEITHKRRLSALGPGGLSRERAGFEVRDVHHTHYGRICPIETPEGPNIGLISSLGI
YAKINNLGFIETPYRKVEDGKIDLSADPIYLNAEDEEDKVIAQANVELNDNGEFLTDRII
ARLDGDYPVVEPNQVNLIDVAPNQISGISASLIPFLEHDDANRALMGSNMMRQAVPLLKP
QAPIVGTGLEQQVAKDSRILINAEGTGTVEYVDADKIVIKYERSEDEDLVSFESATKTYN
LTKFRKTNQSTTITLRPNVRVGDVVEKGQVLCDGYATEDGELALGRNLVVAFMPWKGYNF
EDAIVINEKVVREDWFTSIHVDEYSLEVRDTKLGMEELTADIPNVSEEATKDLDENGMIR
IGAEVKPGDIMIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKADSSLRGVVINKK
LFSRNIKDKKKRTEEKLKLEEIENTYKAKFDELRNTLIEKLNTLVSGKTSQGVKNDLDEE
IIGKGVKFTHKLLTSVEDYVNVSGSDWTVDNDKNELIKQLIHNYKIKYNDIQGVKNREKF
AISIGDELPAGIMKLAKVYIAKKRKLNVGDKMAGRHGNKGIVSRIVREEDMPFLEDGTPV
DIVLNPLGVPSRMNIGQIYETVLGWAGKKLGLKFATPIFDGASLDQITEYTEKAGLPKFG
NTYLYDGGTGERFTQPATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQ
RFGEMEVWALEAFGASNILREILTVKSDDVIGRAKTYEAIAKGESMPEPGIPESFNVLLH
ELQGLGLDVRLEE
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaacaacagcaacaactaggggggataagagagttaacttctcttcagcgaaa
ggaaaaattattactccagacttcttggatatccaaattgagtctttcagtgagtttttc
cagctagatacccttccggaagacagaacaaacgaaggtttgtataagaccttccaggaa
aatttcccgattaccgattccagaaaccaattcgtattggaattcctggattatttggtg
gattctccacgttattcaattgatgagtgtgtggaaagaggattgacgtattcagtgcct
cttaaagcaagacttaaattgtattgtacagaccctgaacacgaggatttccagactgtg
gttcaggatgtatatttaggccctgttccttatatgacgcctagtggatctttcatcatc
aatggtgcagaaagagttatcgttacgcagcttcaccgttcacctggtgtattcttcgga
caaacgtaccacgcaaatggaacaaaattgtattattcaagaattatccctttcaaagga
tcttggatggaatttacgaccgatatcaacagcgttatgtacgcatatatcgaccgtaag
aaaaaattaccattaactactttattaagagcgattggttacgaatctgataaggatatc
cttcagatctttgaccttgctgaggaagtgaaagtttctaaagctgcccttaaaaaagtt
gaaggaagaacattggctgcgagagttttgaacacttggttcgaagatttcgtagatgaa
gatacgggtgaggtagtttctatcgaaagaaatgaaatcatcttggatagagaaacaatt
cttgaaaaagaacatttggatcttattcttgatgctggtgtgaaatctatcttgattcac
aaagaaaacagcaatgaattctctatcatccagaatacattacaaaaagaccctaccaac
tctgaaaaagaagcggtagagtacatctatcgtcagttaagaaacgcagatccgccagat
gaggaaacagcaagaggaattatcgaaaaattattcttctctgagcagagatattctcta
ggtgaagtaggacgttacagattgaataaaaaattaggtcttaacattcctacaactact
gaggttcttacaaaagaagatatcatcgctattgtaagacacttgatcgaacttgttaac
tctaaagcagaagttgatgatatcgaccacttatcaaacagaagaatcaaaactgttggt
gagcaattagctggacaattcggtgtaggtctttcaagaattgcaagaacaatcaaggaa
agaatgaacgttagagataacgaaatctttactccacttgatcttgttaatgcgaaaaca
ttaacatctgtaatcaactcgttctttggtaccaaccagctttctcagttcatggaccag
accaacccgctttcagagatcactcacaagagaagattatctgcactagggcctggaggt
ttatcaagagaaagagcaggtttcgaggttcgagacgttcaccatactcactacggaaga
atttgtccgattgaaactccggaaggaccaaacatcggtttgatttcatctttaggtatt
tatgctaagatcaataacttaggtttcatcgaaactccatatagaaaagtagaagatggt
aagatcgatttatcggctgatccaatttacttaaatgcagaagacgaagaagataaagta
attgctcaggcgaacgttgaactaaacgataacggtgagttcttgacagacagaattatt
gcaagattggatggtgactaccctgtagttgagccaaatcaggtaaatcttatcgacgta
gcaccaaaccagatttcgggtatttctgcatcattaattccattcttggagcatgatgat
gcgaaccgtgccttgatgggatccaacatgatgcgtcaggcagttcctttgttgaagcca
caggctccaatcgtaggtacaggtctggaacagcaagttgcgaaagattcaagaatttta
attaacgctgaaggtacgggtactgtagagtacgtagatgctgacaaaatcgttattaaa
tatgaaagaagtgaggacgaggatttagtatcatttgaatctgctactaaaacatataac
ttaactaagtttagaaaaaccaaccaaagtacaactatcacgctaagaccaaacgtaaga
gtaggtgatgtagtggagaaaggacaggtactttgcgacggttatgctactgaagacgga
gaattagctcttggtagaaacttagtggttgcgttcatgccttggaaaggatacaacttc
gaggatgcgattgtaatcaacgaaaaagttgtacgtgaagactggtttacttccatccac
gtagatgaatattctcttgaggttcgtgataccaaattaggtatggaagaattgacagca
gatattccaaacgtttctgaagaagcaactaaagatcttgatgaaaacggtatgatcaga
atcggtgctgaagtgaagcctggagatatcatgattggtaaaatcactccaaaaggtgaa
tctgacccgactcctgaagaaaagcttttaagagcaatcttcggtgacaaagctggtgat
gtgaaggatgcttcattgaaggctgactcatcattaagaggggttgtaatcaacaaaaag
ttgttctcaagaaacattaaagataaaaagaagagaactgaggagaaacttaaacttgaa
gaaattgaaaacacttacaaggctaagtttgatgagttgagaaatactttaattgaaaaa
ttaaatacactggtaagcggtaaaacttctcagggggttaaaaatgacctagatgaagaa
atcatcggtaaaggtgtgaaattcactcataaattattgacttcagttgaagattatgta
aacgttagcggctcagactggactgtagataacgataaaaatgaattgatcaaacaatta
attcataattacaaaatcaaatataatgatattcaaggggttaaaaaccgtgagaaattc
gcaatttcaatcggagacgagcttcctgcaggtatcatgaaattggctaaagtttatatt
gctaaaaaacgtaaactgaatgtaggggataaaatggcaggacgtcacggtaacaaaggt
atcgtttcgagaatcgttcgtgaagaagatatgccattcctagaagatggaacaccggta
gatatcgtattgaatccactaggggtaccttcccgtatgaacatcggtcagatttatgaa
acagttcttggatgggctggtaaaaaattaggattgaagttcgctacaccaatttttgac
ggagcaagcttagatcaaatcactgaatacactgaaaaagcaggtcttcctaaatttggt
aacacctatctttatgatggtggtaccggagaaagatttacacagccggctacagtaggg
gtaatctatatgttgaaactagggcacatggtagatgataagatgcacgcacgttctatc
ggtccttactcattgattactcagcagccgttaggaggtaaagctcagttcggaggtcag
agattcggagagatggaggtttgggctcttgaagcattcggagcatctaacatcttgaga
gaaatcttaactgtgaagtcagatgacgtgattggtagagcaaaaacttatgaagcaatt
gcaaaaggtgaatcgatgcctgaaccaggtattccggaatcattcaacgtattacttcac
gagttacaaggtcttggattagacgtaagattggaagagtaa
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