Campylobacter helveticus: CHELV3228_0355
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Entry
CHELV3228_0355 CDS
T04807
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
chv
Campylobacter helveticus
Pathway
chv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
chv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CHELV3228_0355 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chv03021
]
CHELV3228_0355 (rpoB)
03400 DNA repair and recombination proteins [BR:
chv03400
]
CHELV3228_0355 (rpoB)
Enzymes [BR:
chv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CHELV3228_0355 (rpoB)
Transcription machinery [BR:
chv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CHELV3228_0355 (rpoB)
DNA repair and recombination proteins [BR:
chv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CHELV3228_0355 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ARE79994
UniProt:
A0AAX2UKQ3
LinkDB
All DBs
Position
319538..323671
Genome browser
AA seq
1377 aa
AA seq
DB search
MLNNKLGNRFRVDFSNISKQIEIPNLLQLQKASFDYFLNLSDTKSESGIEKVFKSIFPIH
DPQNRLSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIRLTLHEKDEKTGEKVGIKDI
KEQEIFIREIPLMTDRVSFIINGVERVVVNQLHRSPGVIFKEEESSTVANKLVYTAQIIP
DRGSWLYFEYDAKDVLYVRINKRRKVPITMLFRALGYKKQDIIKLFYPIQTIHVKKDKFL
TEFNPNDFVDRVEYDIKDEKGKVVHPAGKRLTKKKIEQLVKDGLKWVEYPLEVLINRYLA
SPIIDKQSGEVIFDSLTLIDEGKLTKIKEQKSFDIANDLANGVDAAIINSFMQDSETLKL
LKQSENLEDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFFNPERYDLTKVGRMKMNHK
LALDVPEYITVLTNEDIIKTAKYLIKVKNGKGYIDDRDHLGNRRIRSIGELLANELHLGL
TKMQKAIRDKFSSLNADLEKVMPYDLINPKMITTTILEFFTGGQLSQFMDQTNPLSEVTH
KRRLSALGEGGLVKERAGFEVRDVHATHYGRICPVETPEGQNIGLINTLSTYAKVNELGF
VEAPYKKVVNGKVSDEVVYLTATQEEGLFIAPASTKIDAKGNIVEEFVEARQDGETILAR
REEVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLTSSAPIVGTGMER
IIARDAWEAVKAKRGGVIEKVDNKSIFILGEDEKGPFIDHYSLEKNLRTNQNTNYVQHPI
VKKGDVVEAGQVIADGPSMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTS
VHIYEKEIEARELKDGVEEITKDIPNVKEDDVAHLDESGIAKIGTHIKPGMILVGKVSPK
GEVKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRALKSYD
KEKMALEKEYHDRLLMMDREEMLRVYALLAKAPLNSEQKVGSKSYKKGQKVAREDLEKVN
RFILTSLIKAYSKEIQKQYDDLKNHFQDEKKKLKAEHDEKLEILDKDDILSSGVVKLVKI
YIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRMNIGQI
LESHLGLVGLKLGEQIQEIFDKKQKDFVKTLRKKMLEICSIPRLANEKAFVEGLNDDELL
NYARDWSRGVKFATPVFEGVNIKEFAKLFEMAKVDMDGKTELYDGRTGEKIAERVHVGCM
YMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLREM
LTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDEENE
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atgttaaataataaattaggaaatcgttttagggtagatttctccaatatttccaaacaa
attgaaattccaaatcttcttcaattacaaaaagcaagttttgattattttttaaatctt
agtgatacaaaaagcgaaagcggtatagagaaagtgtttaaatccatttttcctatccac
gacccacaaaatagactttcattagaatatgtaagtagtgaaataggtaagccaaaatat
accataagagaatgtatggaaagagggctaacttattcggtaaatttgaaaatgaaaatt
cgtcttactcttcacgaaaaagatgaaaaaacaggtgaaaaagttggcattaaggatatt
aaagaacaagagatttttatacgcgaaattcctttaatgacagatagagtttcttttatc
attaatggtgttgaaagagttgtggttaatcagcttcatagaagtccgggtgttattttc
aaagaggaagaaagctccacggtggcaaataagcttgtttatactgctcaaatcattcca
gatagaggctcgtggttatattttgagtatgatgccaaagatgtgctatatgttaggata
aataaaagaagaaaagtgcctataactatgctttttagggctttaggatataaaaaacaa
gatattataaaattattttatcctatccaaaccattcatgtgaaaaaagataaattttta
acggaatttaacccaaatgattttgttgatagagtagaatatgacataaaagatgaaaaa
ggcaaggttgttcatccagctggtaaaagattaacaaaaaagaaaattgaacagcttgtt
aaagatggattaaaatgggtggaataccctttagaagttcttataaatagatatttggca
agtcctattatcgataagcaaagtggagaggtgatttttgactctttgactttgattgat
gagggtaagctgactaaaatcaaagagcaaaaaagttttgatatagcaaatgatttagct
aatggcgtggatgcggcgattattaattcttttatgcaagatagtgaaactctaaaatta
cttaagcaaagcgaaaatttagaagatgaaaacgatttggcggcgattagaatttataag
gttatgcgtccgggtgagcctgtggttaaagatgcggctaaggcttttgtaaatgattta
ttttttaatccagaaagatatgatttgactaaagttggtcgtatgaagatgaatcataaa
ttggcccttgatgtgcctgagtatattactgttttaacaaatgaggatatcataaaaact
gcaaaatatcttataaaagttaaaaatggtaaaggatatattgatgatagagaccatttg
ggtaatcgtcgtatccgctctatcggtgaacttttggctaatgagcttcatttaggactg
accaaaatgcaaaaagcgattagagataaatttagctctttaaatgcggatttagagaag
gttatgccttatgatttgattaatcctaagatgataacaacaacaattttagaatttttt
acgggcgggcaattatcgcaatttatggaccagactaatcctcttagcgaagttacacac
aaacgccgtttgtccgcacttggtgagggtggcttagtaaaagaaagagctggttttgag
gtgcgtgatgtgcatgcaactcattatggtagaatttgccctgttgaaactccagaaggg
cagaatataggacttatcaacactctttcaacttatgcaaaagtgaatgagctaggcttt
gttgaagcaccttataaaaaagtcgttaatggcaaggttagcgatgaagtggtttatctt
actgccactcaagaagagggtctatttattgctccagcttcgacaaaaatcgatgcaaaa
ggaaatattgtcgaggaatttgtggaggcaagacaagatggtgaaaccatccttgcaaga
agagaagaggttcaattaatcgacctttgctctggtatggttgtgggcgtagcagcttct
ttgatacctttcttagagcacgatgacgcaaatagggcattaatgggttcaaatatgcaa
cgccaagctgtgccactgcttacttcttctgcacctatagtgggaactggtatggaaaga
attattgcaagggacgcgtgggaggctgttaaggctaagcgtgggggagtgatagaaaag
gttgataataaaagcatatttattttaggtgaagatgaaaaaggtccttttatcgaccac
tatagtctagaaaagaatttaagaacaaatcaaaatactaattatgttcaacatcctatc
gttaaaaagggtgatgtggtcgaagcggggcaggttatagccgatggtcctagtatggac
caaggtgaacttgctataggcaaaaatgcccttatcgcttttatgccttggaacggttac
aattatgaggatgccattgttgtgagtgaaagaattatccgtgaggatacttttacaagt
gtgcatatttatgaaaaagaaattgaagcaagagaattaaaggacggcgttgaggaaatt
actaaagatattccaaatgttaaagaagatgatgttgcccatcttgatgaaagcggtatt
gcaaaaattggaactcatataaagccgggtatgattttagtgggtaaggtttctcctaaa
ggggaagtaaagcctacgccagaggaaaggcttttaagagctatttttggagaaaaagct
gggcatgttgttaataaatctttatatgctactgcttccttagagggtgtggttgttgat
gtgaaaattttcactaaaaaaggttatgaaaaagatgatagagccttaaagtcttatgat
aaagaaaaaatggctttagaaaaagagtatcacgacagacttttaatgatggatagagag
gaaatgctaagagtttatgctcttttagctaaggcacctttaaatagtgagcaaaaagta
ggtagtaagagctataaaaaggggcaaaaagttgctagggaggatttagaaaaagttaat
cgttttatcttaacaagcctcataaaagcttattctaaagagatacaaaagcagtatgat
gatttaaaaaatcacttccaagatgaaaagaaaaagcttaaagccgaacacgatgaaaag
cttgaaattttagacaaagatgatatcttgtcaagtggggttgttaaacttgttaaaatt
tacattgcgacaaaaagaaaactcaaggttggcgataaaatggcgggacgacacggaaat
aaaggtatcgtttctaccatagtgcctgaggtggatatgccttatcttccaaatggtaaa
agcgttgatattgctttaaatccgcttggtgtgcctagccgtatgaatatcgggcaaatt
ttagagagccatttgggacttgtgggcttaaaactaggtgagcaaatccaagaaattttt
gataaaaagcaaaaagattttgttaagactttacgcaagaaaatgctagaaatttgttct
atcccgcgtcttgcaaatgaaaaagcctttgttgagggcttaaacgatgatgagctttta
aactatgcaagagattggagtaggggtgtgaaatttgctactcctgtttttgagggggtt
aatataaaggaatttgccaaactttttgaaatggctaaagtggatatggacggcaaaaca
gaactttatgacggacgcactggggagaagattgctgagcgtgtgcatgtaggatgtatg
tatatgcttaaacttcatcaccttgtcgatgaaaaagtgcatgcaagaagcacaggacct
tatagtcttgtaacacaacagcctgtgggtggtaaggcactttttggaggacagagattt
ggagaaatggaagtttgggctttagaagcttatggagctgcacatactttgcgtgaaatg
ctaacaataaaatccgatgatgttgaagggcgttttagtgcctacaaggctttaactaag
ggagaaaatgtcccagccacaggcatacctgaaaccttttttgttttaaccaacgagctt
aaatctttggctttagatgttgagatttttgataaggatgaagagaatgagtaa
DBGET
integrated database retrieval system
