Carboxydothermus hydrogenoformans: CHY_1168
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Entry
CHY_1168 CDS
T00287
Name
(GenBank) HDIG/KH domain protein
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
chy
Carboxydothermus hydrogenoformans
Pathway
chy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHY_1168
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chy03019
]
CHY_1168
Messenger RNA biogenesis [BR:
chy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CHY_1168
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Ortholog
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GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
KH_PNO1_2nd
HDOD
KH_NusA_2nd
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
ABB13886
UniProt:
Q3ACX1
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All DBs
Position
1041322..1042863
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AA seq
513 aa
AA seq
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MNLITDIIIAVAGVGVGVAAGYVIRKNIAEAAIGSAEAQAKKIIDEATKAAEAKKREAVL
EAKEEILKMKNEVEREHRERRQELQRLERRLLSKEETLDRKIESFERKEEQLAKKEQEIE
NLRQSLEETLQKELAELERISGLSTEEARELLLKQVEEEVQQEMALLIKEIETKAKEEAE
KRAREIITLAIQRCAADHAAETTVTVVALPNDEMKGRIIGREGRNIRTFESLTGVDLIID
DTPEAVILSGFDPIRREIARRALEKLIQDGRIHPARIEEMVERATKEVEQDIREAGEQAA
FEVNVHGLHPEIIKLLGRLKFRTSYGQNILKHSIEVAHLAGLMAAELGADVALAKRAGLL
HDIGKAVDHEVEGSHVEIGVELAKKYREHPEVLHAIATHHGDEEPKTVEAVLVQAADAIS
AARPGARRETLEAYLKRLEKLEGIANEFEGVEKSYAIQAGRELRILVKPEKIDDLASVRL
AREIAKKIEEEVEYPGQIKVTVIRETRAVDYAK
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
ttgaatttaataaccgacataattattgctgttgctggagttggggttggggttgctgca
ggttatgttatcagaaaaaacattgctgaggcagccatcggttccgcagaagctcaggct
aaaaaaataattgacgaagcaacaaaagccgctgaagccaagaaaagagaagcggtttta
gaagcaaaagaagaaattttaaaaatgaaaaatgaagtagaaagagaacaccgggaaaga
cgccaggaattgcaacgtttagagcgcaggcttctttccaaggaagaaaccttggatcgg
aaaatagaaagttttgagagaaaagaagagcagttagccaaaaaggagcaggaaatagag
aatttgcggcaaagcttagaggagacgctgcaaaaagaattggctgagttagaacggatt
tcgggactttctaccgaggaggcaagggagctccttctaaaacaagtggaagaagaagtt
caacaagaaatggccttattaatcaaggaaattgaaacaaaggccaaagaagaggccgaa
aaaagagccagggaaattattacattagcaattcaaagatgtgctgctgatcatgcggcc
gaaaccacagttacggttgttgccctccccaatgatgagatgaaaggaagaataataggg
cgtgaaggtcggaacataaggacttttgaatctttaacgggtgttgatttaattattgat
gatacccccgaggctgttattctttccgggtttgatccaatccgccgggaaatcgcccga
cgagccctggaaaagttaatccaggatgggagaattcacccggcgcgtattgaggaaatg
gtggaaagggctaccaaagaagtagagcaagatataagggaagctggtgaacaagcagct
tttgaggttaacgttcacggtttacatcccgagattattaaactacttggtaggttaaaa
tttagaacaagttacggacaaaatattttaaagcattctattgaggttgcccacttagcc
ggcttaatggctgctgagttgggagctgatgttgctttagcaaaacgggctgggcttttg
cacgatatcgggaaagccgttgaccatgaagtggaaggatcccatgtggaaattggggtt
gagcttgctaaaaaataccgcgagcatccggaagttttacatgcaattgccacccatcat
ggtgatgaagagccaaaaacagtggaagcagtacttgtgcaagctgccgatgccatttct
gccgcaagacccggagcaaggcgtgaaactttggaagcctatcttaaacggctcgaaaaa
ttagaaggaattgctaatgagtttgaaggtgtggagaaatcttatgctatccaggctggc
cgggaactaagaatcctggtaaaacctgaaaagatagatgacctggcttccgttcgttta
gctcgggagattgctaagaaaattgaagaagaggtggaatatcccgggcaaataaaagtt
accgttatacgggaaaccagggcagtcgattacgcaaaatag
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