Chryseobacterium sp. StRB126: CHSO_4431
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Entry
CHSO_4431 CDS
T03602
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
chz
Chryseobacterium sp. StRB126
Pathway
chz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
chz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CHSO_4431
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chz03021
]
CHSO_4431
03400 DNA repair and recombination proteins [BR:
chz03400
]
CHSO_4431
Enzymes [BR:
chz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CHSO_4431
Transcription machinery [BR:
chz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CHSO_4431
DNA repair and recombination proteins [BR:
chz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CHSO_4431
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
BAP33468
LinkDB
All DBs
Position
complement(5022618..5026439)
Genome browser
AA seq
1273 aa
AA seq
DB search
MSKTKSTTQGNPRINFSSAKGKIVTPDFLDIQIESFREFFQLDTLPEARKTEALYKTFQE
NFPITDSRNQFVLEFLDYLVDSPRYSIDECVERGLTYSVPLKARLKLYCTDPEHEDFQTV
VQDVYLGPVPYMTPSGSFIINGAERVIVTQLHRSPGVFFGQTYHANGTKLYYSRIIPFKG
SWMEFTTDINSVMYAYIDRKKKLPLTTLLRAIGYESDKDILQIFDLAEEVKVSKAALKKV
EGRTLAARVLNTWFEDFVDEDTGEVVSIERNEIILDRETILEKEHLDLILDAGVKSILIH
KENSNEFSIIQNTLQKDPTNSEKEAVEYIYRQLRNADPPDEETARGIIEKLFFSEQRYSL
GEVGRYRLNKKLGLNIPTTTEVLTKEDIIAIVRHLIELVNSKAEVDDIDHLSNRRIKTVG
EQLAGQFGVGLSRIARTIKERMNVRDNEIFTPLDLVNAKTLTSVINSFFGTNQLSQFMDQ
TNPLSEITHKRRLSALGPGGLSRERAGFEVRDVHHTHYGRICPIETPEGPNIGLISSLGI
YAKINNLGFIETPYRKVEGGKIDLNAAPIYLNAEDEEDKVIAQANVELSDNGDFLTDRII
ARLDGDYPVVEPAQVNLIDVAPNQISGISASLIPFLEHDDANRALMGSNMMRQAVPLLKP
QAPVVGTGLEQQVARDSRILINAEGTGTVQYVDADKITIKYERSEDEDLVQFESATKTYN
LTKFRKTNQSTTITLRPNVRVGDVVEKGQVLCDGYATEKGELALGRNLVVAFMPWKGYNF
EDAIVINEKVVREDWFTSIHVDEYSLEVRDTKLGMEELTADIPNVSEEATKDLDENGMIR
IGAEVKPGDIMIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKADSSLRGVVINKK
LFSRNIKDKKKRTEEKLKLEEIENTYKAKFDELRNTLIEKLNTLVSGKTSQGVQNDLDEE
IIGKGVKFTHKLLTSVEDYVNVSGSDWTVDADKNELIKQLIHNYKIKYNDIQGVKNREKF
AISIGDELPAGIMKLAKVYIAKKRKLNVGDKMAGRHGNKGIVSRIVREEDMPFLEDGTPV
DIVLNPLGVPSRMNIGQIYETVLGWAGQKLGMKFATPIFDGATLDQITEYTEKAGLPKFG
HTHLYDGGTGERFTQAATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQ
RFGEMEVWALEAFGASNILREILTVKSDDVIGRAKTYEAIAKGESMPEPGIPESFNVLLH
ELQGLGLDVRLEE
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaacaaaatcaacaactcaaggaaatccgagaattaatttctcatcagcgaaa
ggaaaaattgtaactccagacttcttggacatccaaatcgagtctttcagagaatttttc
cagcttgatacacttcctgaagccagaaagacagaagctctttacaagactttccaagag
aatttcccaattacggattcaagaaaccaattcgtattagaattcttagactatctggta
gattctccacgttattcaattgatgagtgtgtggaaagaggacttacttattcagtacct
ctaaaagcaagacttaaattgtactgtactgacccggaacacgaagatttccaaacagtg
gttcaggatgtatatttaggtccggttccttacatgacgccaagtggatctttcattatc
aatggtgctgaaagagttattgttacgcagcttcaccgttcacctggtgtattcttcgga
caaacttaccacgctaacggaaccaaactttactattcaagaattattcctttcaaagga
tcttggatggaatttacaacggatatcaacagcgtaatgtacgcgtatatcgaccgtaag
aaaaagttaccattaacaactttattaagagctattggttatgaatctgataaggatatc
cttcagatcttcgaccttgctgaagaagtgaaagtttctaaagcggcccttaaaaaagta
gaagggagaacattggctgcgagagtattgaacacttggttcgaagatttcgtagacgaa
gatacaggtgaagtagtttctatcgaaagaaacgaaatcatcttagatagagagactatc
ctggagaaagaacacttagatcttatcttggatgctggtgtgaaatctatcttgattcac
aaagaaaacagcaatgaattctctatcatccagaatacattacaaaaagaccctactaac
tctgagaaagaagcagtagagtatatctatcgtcagttaagaaatgcagatccaccagat
gaggaaactgcaagaggaatcattgaaaaattattcttctctgagcagagatactcttta
ggtgaagtaggacgttacagactaaacaaaaagttaggtcttaacatcccaactacaact
gaagttcttacaaaagaggatatcattgcaatcgtaagacacttaattgaacttgtaaac
tctaaagcggaggtggatgacatcgaccacttatcaaacagaagaattaaaactgttggt
gagcaattagcagggcagttcggtgtaggtctttcaagaattgcaagaacaatcaaagag
agaatgaacgttagagataacgaaatatttactccacttgatcttgttaatgctaagacg
ttaacgtctgttattaactcattcttcggtaccaaccagctatctcagttcatggaccaa
accaaccctctatcagagatcactcacaagagaagattatctgcactagggcctggtggt
ttatcaagagaaagagcaggtttcgaggttcgtgacgttcaccatactcactatggaaga
atttgtccgattgaaactccggaaggaccaaacatcggtttgatttcatcgctaggtatt
tatgcaaaaatcaacaaccttggtttcatcgaaactccatatagaaaagtagaaggtggt
aagatagatcttaacgctgctcctatttatctgaatgcagaagacgaagaagataaagta
attgctcaggcaaacgttgaattaagtgataatggtgatttcttaacagacagaattatt
gcaagattagatggtgactacccggtagttgaaccagctcaggttaaccttatcgacgtt
gcacctaaccagatttccggtatttctgcttcattaattccattcttggaacatgatgat
gcgaaccgtgcattgatgggatctaacatgatgcgtcaggccgttcctctattgaagcca
caggctccagttgttggtacagggcttgagcagcaagttgcaagagattcaagaatctta
attaacgctgaaggtacaggtacagtacagtacgtagatgctgacaagattaccatcaaa
tatgaaagaagtgaagacgaagatttagtacaatttgagtctgctactaaaacatacaac
cttactaagtttagaaaaactaaccagagtactaccattaccctaagaccaaacgtaaga
gtaggtgatgtagtggaaaaaggacaggtactttgcgacggctatgcgacggaaaaagga
gaattagctcttggtagaaacttagtggtagcgttcatgccttggaaaggatacaacttt
gaggatgccatcgtaatcaacgaaaaagttgtacgtgaagactggtttacttccatccat
gtggatgagtattcacttgaagttcgtgatactaaattaggtatggaagagcttacagca
gatattccaaacgtatctgaagaagctactaaagatcttgacgaaaacggtatgatcaga
atcggtgctgaagtgaagcctggagatatcatgattggtaaaattactccaaaaggtgaa
tctgacccgactcctgaagaaaaacttcttagagcaatcttcggtgataaagctggtgat
gtaaaagatgcatcattaaaagctgactcttcattaagaggggttgttatcaacaagaag
ttgttctctagaaacattaaagacaaaaagaaaagaactgaagaaaaacttaaacttgaa
gagattgaaaacacttacaaggctaagtttgacgagttgagaaacactttaattgaaaaa
ttaaatacactggtaagcggtaaaacttctcaaggggtacaaaatgaccttgacgaagaa
attatcggtaaaggggtgaagtttactcacaagttattaacttcagttgaagattatgta
aatgttagcggttcagattggacagtagacgcagacaagaatgaattgattaaacaattg
attcacaattacaaaatcaaatataacgatatccaaggggttaaaaaccgtgagaaattt
gcaatttcaatcggagatgagcttccagcagggatcatgaagctggctaaagtttacatc
gctaagaaacgtaaactgaatgtaggggataaaatggcaggacgtcacggtaacaaaggt
atcgtatcgagaatcgttcgtgaagaagatatgccattcctggaagacggaacaccagta
gatatcgtattgaatccactaggggtaccttctcgtatgaacatcggacagatctatgaa
acagttcttggatgggctggtcagaaattaggaatgaagttcgctacaccaatctttgac
ggagcaactcttgatcagattactgagtacactgaaaaagcaggccttcctaaattcggt
cacactcacctttatgatggtggtaccggagaaagatttacacaggcagctacggtgggt
gttatctacatgctgaaactaggacacatggttgatgataagatgcacgcacgttctatt
ggtccttactcattgattactcagcagccgttaggaggtaaagctcagttcggtggtcag
agatttggagagatggaggtttgggcacttgaagcattcggtgcatctaacatcttgaga
gagatccttactgtgaagtcagatgacgtgattggtagagcaaaaacttatgaagcaatt
gcaaaaggtgaatctatgcctgaaccaggtattccggaatcattcaacgtattacttcac
gagttacaaggtcttggattagacgtaagacttgaggaataa
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