Citrobacter sp. TSA-1: HF677_022380
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Entry
HF677_022380 CDS
T09275
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cib
Citrobacter sp. TSA-1
Pathway
cib03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cib00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HF677_022380 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cib03021
]
HF677_022380 (rpoB)
03400 DNA repair and recombination proteins [BR:
cib03400
]
HF677_022380 (rpoB)
Enzymes [BR:
cib01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HF677_022380 (rpoB)
Transcription machinery [BR:
cib03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HF677_022380 (rpoB)
DNA repair and recombination proteins [BR:
cib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HF677_022380 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
QKE22276
LinkDB
All DBs
Position
complement(4714405..4718433)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRDNKLQME
LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEYIAGKVAAKD
YVDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETVRVDPTNDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT
DEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRIYAVLVSGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PIEDMPHDANGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK
LREFIQRAYDLGSDVRQKVDLNTFSDEEVLRLAENLKKGMPIATPVFDGAKESEIKELLQ
LGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccgcaa
gtgttggacataccttatctcctttctatccagcttgactcgtttcagaagttcatcgag
caagatcctgaagggcagtatggtctggaagcagctttccgttccgttttcccgattcag
agctacagcggtaattccgagctgcaatacgtcagctaccgccttggcgaaccggtgttt
gacgttcaggaatgtcagatccgtggcgtgacctattccgcaccgttgcgcgtaaaactg
cgcctggtgatctacgagcgcgaagcgccggaaggcaccgtaaaagacattaaagaacaa
gaagtctacatgggcgaaattccgctcatgacagacaacggtacctttgttatcaacggt
actgagcgtgttatcgtttctcagctgcaccgtagtcctggcgtcttctttgactccgac
aaaggtaaaacccactcttcgggtaaagtgctgtataacgcgcgtatcatcccttaccgt
ggttcctggctggacttcgaattcgatccgaaggacaacctgttcgtacgtattgaccgt
cgccgtaaactgcctgcgaccattattctgcgtgcactgaactacaccactgagcagatc
cttgacctattctttgagaaagttgttttcgaaattcgtgacaacaagctgcagatggaa
ctggtgccggaacgcctgcgtggtgaaaccgcctcctttgacatcgaagctaacggcaaa
gtctacgtcgaaaaaggccgtcgcatcactgcgcgccacattcgccagctggaaaaagac
gatatcaaacatatcgaagttccggttgaatacattgctggtaaagttgcggctaaagac
tacgttgacgaatctactggcgagctgatctgcgcagctaacatggagctgagtctggat
ctgctggctaagctgagccagtctggccacaagcgtatcgaaacgctgttcaccaacgat
ctggaccacggtccgtacatttctgaaactgtacgtgtcgacccaaccaacgatcgtctg
agcgcgctggtagaaatctaccgcatgatgcgccctggtgagccgccgacgcgtgaagct
gctgaaagcctgttcgagaacctgttcttctccgaagaccgctatgacctgtctgcggtt
ggtcgtatgaagttcaaccgttctctgctgcgcgacgaaatcgaaggttccggtatcctg
agcaaagatgacatcatcgaagtgatgaagaagctcatcgatatccgtaacggtaaaggc
gaagtcgatgatatcgaccacctcggtaaccgtcgtatccgttccgtaggcgaaatggcg
gaaaaccagttccgcgttggcctggtacgtgttgagcgtgcggtgaaagagcgtctgtct
ctgggcgatctggataccctgatgcctcaggatatgatcaacgctaagccgatttctgca
gcagtgaaagagttctttggttccagccagctgtctcagtttatggaccagaacaacccg
ctgtctgagattacgcacaaacgtcgtatctctgcactcggcccaggcggtttgacccgt
gaacgcgcaggcttcgaagttcgagacgtacacccgactcactacggtcgcgtatgtcca
atcgaaacgcctgaaggtccgaacatcggtctgatcaactccttgtctgtgtacgcacag
actaacgaatacggcttcctcgagactccgtaccgtaaagtgaccgacggtgttgtaact
gacgaaattcattacctgtctgctatcgaagaaggcaactacgttatcgctcaggcgaac
tccaacctggatgacgaaggccactttgtagaagatctggttacctgccgtagcaaaggc
gaatccagcttgttcagccgtgaccaggttgactacatggacgtatccacccagcaggtg
gtatccgtcggtgcgtccctgatcccgttcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcggttccgactctgcgtgctgataagccgctggtt
ggtaccggtatggaacgtgctgttgccgtcgactccggtgttaccgcagttgctaaacgt
ggcggtaccgtccagtacgtggatgcttcccgtatcgttatcaaagttaacgaagacgag
atgtacccgggcgaagcaggtatcgacatttataacctgaccaaatacacccgttctaac
cagaacacctgtatcaaccagatgccttgcgtatctctgggcgagccggttgaacgtggt
gatgtgctggcagacggtccgtccaccgatctcggtgaactggcgctcggtcagaacatg
cgcgtggcattcatgccatggaatggttacaacttcgaagactccatcctcgtatctgag
cgtgttgtccaggaagaccgtttcaccaccatccacattcaggaactggcatgtgtgtcc
cgtgacaccaagctggggccggaagagatcaccgctgacatcccgaacgtgggtgaagct
gcgctctccaaactggatgaatccggtatcgtttatatcggcgcggaagtaaccggtggc
gacattctggttggtaaggtaacgccgaaaggtgaaacccagctgacgccagaagagaag
ctgctgcgtgcgatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgcgtg
ccaaacggtgtttccggtacaattatcgacgttcaggtctttactcgcgatggcgtagaa
aaagacaaacgtgcgctggaaatcgaagagatgcagctgaagcaggcgaaaaaagacctg
tctgaagaactgcaaatcctcgaagctggcctgttcagccgtatctacgctgtgctggtt
tccggtggtgttgaagctgagaagctcgacaaactgccgcgcgatcgctggttagaactc
ggcctgaccgacgaagagaaacaaaatcagctggaacaactggctgagcagtacgacgaa
ctgaaacacgagttcgagaaaaaactcgaagcgaaacgccgtaaaatcactcagggcgac
gatctggcaccgggcgtgctgaagattgttaaggtttatctggcggttaaacgtcggatc
cagcctggtgataagatggcaggtcgtcacggtaacaagggtgtaatctctaagatcaac
ccgatcgaagatatgccacacgatgctaacggtacgccggtagatatcgtgctgaacccg
ctgggcgtaccatcgcgtatgaacatcggtcagatccttgaaacccacctgggtatggct
gcgaaaggtatcggcgataagatcaacgccatgctgaaacagcagcaggaagtcgcgaaa
ctgcgcgaattcatccagcgtgcttacgatctgggttcagatgttcgtcagaaagttgac
ctgaataccttcagcgatgaagaagttctgcgtctggctgaaaacctgaaaaaaggtatg
ccgatcgcaacgccggtgttcgacggtgcgaaagagtctgaaatcaaggaactgttacag
ctgggtggcctgccgacttccggtcagatcacactgttcgacggtcgtaccggtgagcag
ttcgagcgccaggttaccgttggctacatgtacatgctgaaactgaaccacctggttgat
gacaagatgcatgcgcgttctaccggttcttacagcctggttactcagcagccgctgggt
ggtaaggctcagttcggtggtcagcgcttcggggagatggaagtgtgggcgcttgaagca
tacggcgcggcatacaccctgcaggaaatgctcaccgttaagtctgatgacgtgaacggt
cgtactaagatgtataaaaacatcgtggacggcaaccatcagatggaaccaggcatgccg
gaatccttcaacgtactgttgaaagagattcgttcgctgggtatcaacatcgagctggaa
gacgagtaa
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