KEGG   Citrus x clementina (clementine): CICLE_v10023968mg
Entry
CICLE_v10023968mg CDS       T02982                                 
Name
(RefSeq) hypothetical protein
  KO
K14406  cleavage stimulation factor subunit 1
Organism
cic  Citrus x clementina (clementine)
Pathway
cic03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cic00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    CICLE_v10023968mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cic03019]
    CICLE_v10023968mg
Messenger RNA biogenesis [BR:cic03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     CICLE_v10023968mg
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_WDR3_2nd WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd WD40_WDHD1_1st WDR55 Beta-prop_TEP1_2nd WD40_Gbeta EIF3I WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_EIPR1 Beta-prop_TEP1_C NBCH_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st WD40_RFWD3 WD40_MABP1-WDR62_1st Beta-prop_NWD2_C Beta-prop_DCAF4 Cytochrom_D1 Beta-prop_NOL10_N Ge1_WD40 Beta-prop_SCAP Beta-prop_VPS8 Beta-prop_IFT140_1st
Other DBs
NCBI-GeneID: 18046664
NCBI-ProteinID: XP_006440795
UniProt: V4TQM9
LinkDB
Position
Unknown
AA seq 474 aa
GLSKPKMDSNNNNSCSILEKTLRDGKLFRQVNSLIVAHLRDHNLSQAANAVASATMTPLN
AEAPQNRLTELVAKGLAVEKDEILRGVPSNSLYDTSTLIPATATAAYGSIPAPRAATYFG
EMTTAGVWISYPNLFSVRSYYAVQDTKGSSKSFPKHETRHLSEHKNIARCARFSPDGRFI
ATGSADTSIKLFEVAKIKQMMLPDSTDGPVRPVIRTFYDHIQPINDLDFHPQNTVLISGG
KDHTIKFFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCY
LSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATS
ANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP
SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEIL
NT seq 1425 nt   +upstreamnt  +downstreamnt
ggtttaagcaaaccaaaaatggatagcaacaataacaacagctgcagcatcttagagaag
acattgcgggacgggaagctgtttcgtcaagtcaattccctgattgtggctcatcttcgc
gaccacaatctctctcaggctgcaaatgctgttgcttcagccacaatgacgcctttaaat
gctgaagctccccaaaacaggctcactgaactggttgccaagggtcttgcagtggagaaa
gatgagatattaagaggggttccgtctaattcattgtatgacaccagcacattgatacct
gctactgctactgcagcatacggctcaatcccggctccccgtgctgctacttatttcggt
gaaatgactactgctggtgtctggatttcatacccaaatctgttctctgttagaagttat
tatgctgtacaagacacaaaaggctcgtcgaagagttttcctaagcatgagacacggcat
ctttctgagcacaagaacattgccagatgtgcaagatttagtcctgatggaagatttatt
gcgactggaagtgcagacacatcgatcaagctctttgaggtcgcaaaaatcaagcaaatg
atgctgccagattcaacggatggtcctgtgcggccagtcatacggactttttatgaccat
atacaacctataaatgatttggatttccatcctcaaaacactgtcctgatatctgggggc
aaggatcacacaataaagttcttcgatttttcgaaagctactgcaaaaagagcattcaga
gttatccaggatactcacaatgtgcgttccgtatcatttcatccttctggggatttcctt
cttgcaggaactgatcatccaattgcgcacttgtatgatgttaatacttttcagtgttac
ctatctgcaaatgttccagagatcagtgttaatggagccataaatcaggtgaggtattca
tccacaggcggtatgtatgttacggcatccaaagatggtgctattcgtttgtgggatggg
gtaagtgccaattgtgtgcgctccatagtcggtgcacatggaactgcggaggccaccagc
gcaaactttacgaaggatcaaaggtttgttctttcctgtgggaaggattcaactgtgaag
ctttgggaagttagtagtggaagattggtcaaacaatatcttggagccacgcatacacaa
ctacgattccaggctgtttttaacgacactgaagagtttgtactgtccattgacgaacct
agcaatgagattgttatctgggatgctttaacagctgaaaaggtggcaaagtggtcgtcg
aatcatattggcgcacctcgttggattgagcattctccagcagaggctgccttcattacc
tgtgggactgacaggtcagtccggttctggaaagagattctgtag

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