Citrus x clementina (clementine): CICLE_v10023968mg
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Entry
CICLE_v10023968mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K14406
cleavage stimulation factor subunit 1
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CICLE_v10023968mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cic03019
]
CICLE_v10023968mg
Messenger RNA biogenesis [BR:
cic03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
CICLE_v10023968mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WD40_WDHD1_1st
WDR55
Beta-prop_TEP1_2nd
WD40_Gbeta
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
Beta-prop_EIPR1
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
WD40_RFWD3
WD40_MABP1-WDR62_1st
Beta-prop_NWD2_C
Beta-prop_DCAF4
Cytochrom_D1
Beta-prop_NOL10_N
Ge1_WD40
Beta-prop_SCAP
Beta-prop_VPS8
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
18046664
NCBI-ProteinID:
XP_006440795
UniProt:
V4TQM9
LinkDB
All DBs
Position
Unknown
AA seq
474 aa
AA seq
DB search
GLSKPKMDSNNNNSCSILEKTLRDGKLFRQVNSLIVAHLRDHNLSQAANAVASATMTPLN
AEAPQNRLTELVAKGLAVEKDEILRGVPSNSLYDTSTLIPATATAAYGSIPAPRAATYFG
EMTTAGVWISYPNLFSVRSYYAVQDTKGSSKSFPKHETRHLSEHKNIARCARFSPDGRFI
ATGSADTSIKLFEVAKIKQMMLPDSTDGPVRPVIRTFYDHIQPINDLDFHPQNTVLISGG
KDHTIKFFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCY
LSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATS
ANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP
SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEIL
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
ggtttaagcaaaccaaaaatggatagcaacaataacaacagctgcagcatcttagagaag
acattgcgggacgggaagctgtttcgtcaagtcaattccctgattgtggctcatcttcgc
gaccacaatctctctcaggctgcaaatgctgttgcttcagccacaatgacgcctttaaat
gctgaagctccccaaaacaggctcactgaactggttgccaagggtcttgcagtggagaaa
gatgagatattaagaggggttccgtctaattcattgtatgacaccagcacattgatacct
gctactgctactgcagcatacggctcaatcccggctccccgtgctgctacttatttcggt
gaaatgactactgctggtgtctggatttcatacccaaatctgttctctgttagaagttat
tatgctgtacaagacacaaaaggctcgtcgaagagttttcctaagcatgagacacggcat
ctttctgagcacaagaacattgccagatgtgcaagatttagtcctgatggaagatttatt
gcgactggaagtgcagacacatcgatcaagctctttgaggtcgcaaaaatcaagcaaatg
atgctgccagattcaacggatggtcctgtgcggccagtcatacggactttttatgaccat
atacaacctataaatgatttggatttccatcctcaaaacactgtcctgatatctgggggc
aaggatcacacaataaagttcttcgatttttcgaaagctactgcaaaaagagcattcaga
gttatccaggatactcacaatgtgcgttccgtatcatttcatccttctggggatttcctt
cttgcaggaactgatcatccaattgcgcacttgtatgatgttaatacttttcagtgttac
ctatctgcaaatgttccagagatcagtgttaatggagccataaatcaggtgaggtattca
tccacaggcggtatgtatgttacggcatccaaagatggtgctattcgtttgtgggatggg
gtaagtgccaattgtgtgcgctccatagtcggtgcacatggaactgcggaggccaccagc
gcaaactttacgaaggatcaaaggtttgttctttcctgtgggaaggattcaactgtgaag
ctttgggaagttagtagtggaagattggtcaaacaatatcttggagccacgcatacacaa
ctacgattccaggctgtttttaacgacactgaagagtttgtactgtccattgacgaacct
agcaatgagattgttatctgggatgctttaacagctgaaaaggtggcaaagtggtcgtcg
aatcatattggcgcacctcgttggattgagcattctccagcagaggctgccttcattacc
tgtgggactgacaggtcagtccggttctggaaagagattctgtag
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