Citrus x clementina (clementine): CICLE_v10024015mg
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Entry
CICLE_v10024015mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K10845
TFIIH basal transcription factor complex TTD-A subunit
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03022
Basal transcription factors
cic03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CICLE_v10024015mg
09124 Replication and repair
03420 Nucleotide excision repair
CICLE_v10024015mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cic03021
]
CICLE_v10024015mg
03400 DNA repair and recombination proteins [BR:
cic03400
]
CICLE_v10024015mg
Transcription machinery [BR:
cic03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CICLE_v10024015mg
DNA repair and recombination proteins [BR:
cic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CICLE_v10024015mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb5
Motif
Other DBs
NCBI-GeneID:
18045821
NCBI-ProteinID:
XP_006440427
UniProt:
V4TJW9
LinkDB
All DBs
Position
Unknown
AA seq
130 aa
AA seq
DB search
RHDMANGTIRARHVYGSGLRKKKNETTQHNMIQRACWARFFLYFFSSSRHSLNAVDCSHG
CSHRATLPPSHHDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF
RDQNSYEKPA
NT seq
393 nt
NT seq
+upstream
nt +downstream
nt
cgacatgacatggctaacggtacaatacgggcacgacatgtgtacgggtcaggcttaaga
aaaaagaagaatgaaacgacacaacacaacatgatacaaagagcatgttgggcacggttc
ttcctctatttcttttcgagtagccgccacagcctgaacgccgtagactgtagccacggc
tgctcgcaccgtgctacactgccaccgtcgcaccatgacatacccatggcacaattcatc
atcaatatgaatgcttcaatgccacaatcacagaagttcataatacatattctggatagt
actcacctctttgtgcaaccgaatatggctgaaatgatacggagtgcaattgctgagttt
agagaccagaattcttatgagaagcctgcatga
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