Ctenopharyngodon idella (grass carp): 127496817
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Entry
127496817 CDS
T08802
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03008
Ribosome biogenesis in eukaryotes
cide03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
127496817
09123 Folding, sorting and degradation
03018 RNA degradation
127496817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127496817
03009 Ribosome biogenesis [BR:
cide03009
]
127496817
03016 Transfer RNA biogenesis [BR:
cide03016
]
127496817
03036 Chromosome and associated proteins [BR:
cide03036
]
127496817
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
127496817
mRNA degradation factors
5'-3' decay
5' exonucleases
127496817
Ribosome biogenesis [BR:
cide03009
]
Eukaryotic type
Pre-60S particles
RNases
127496817
Transfer RNA biogenesis [BR:
cide03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
127496817
Chromosome and associated proteins [BR:
cide03036
]
Eukaryotic type
Gene silencing
piRNA pathway
127496817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
127496817
NCBI-ProteinID:
XP_051720587
LinkDB
All DBs
Position
2:17511506..17533992
Genome browser
AA seq
1697 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEEKIKKALEKGE
VLPTEARFDSNCITPGTDFMARLQEQLKYFVHNKLSTDKSWQGVNVYLSGHETPGEGEHK
IMEFIRSENSKPGHNPNTRHCLYGLDADLIMLGLTSHEPHFSLLREEVRFGGKKSQKRIT
APEETTFHLLHLSLMREYIDYEFSELRNKISFEYDLERIIDDWVLMGFLVGNDFIPHLPH
LHINHDALPLLYRTYISVLPSLGGYLNENGHLNLAHFEKYLEKLSDFDREHFSEVFVDLK
WFESKVGNKYLNEAAGLAAEEADFKDLKKSKSSDDSLCLSALDGVRESHSAQGREGAEED
GEDDDMFETEFRQYKRTYYMTKMDVEVVSDEFLANQAKCYVEGIQWILHYYYHGVQSWSW
YYPYHYAPFLSDVRNISSLTLTFDLAKPFMPFEQLLAVLPSASKDLLPQCYQHLMTSLSS
PIVEYYPQDFKTDLNGKQQEWEAVVLIPFIDEKCLLAAMEPYTHKLTPSEKARNRHTECA
VYCFDKELDYAYSSPLPQLFPNIVHCHVRQTPIPLDAWRVSMDHVGRRIDRGALYFCGFP
TLQHIRHKFYKKKSGVLVFQQSSRGENMILEILASQEVVQVEDVAVLVLGKSLFVNWPHL
MEARVVAVSDGETKFFLEEPSGSQVLYLENTPPPTKVAHLTDKEQKEWVKEVQGLSEHFS
KRKGIVINETDVVVYAQLLTGRKYVIGQNGSVHLEKQFAKQVLPFPYQTIVKDIKTFDSS
LARFKTLEELFPPGTAVFMVGNPYYGAMGDVQDSSDVISEGRVRVVFSVPCEPQLDALIQ
NQHKYSVKYCPGYVLASRLGITSYLVSRFSGSIFIGRGSKKNPHGEQKVNVGLNLKFNKK
NEEVPGYTKRTEKEWLYSAAVEELLAEYLERFSEVFDFVARNSHDDVFYEDDIWPGEDEN
GAEKIQEIQGWLKTHPVSSTSRASCDLQILDAGIVEKIEEELEKTKAKKMNKKVRVTVKP
HLLFRPLEQQFGVIPDPDAEYHLFDRVVNVRESFSVPLGLRGTVIGIKGAEREAEVLYEV
LFDEEFAGGLTVRCSPGRGYRLPPSALINLSHGSRKEQGSHKLTAIVKPQPSSSSHLSHK
SQLGGLNHSPRSPFIPTQQQNGRQSFNLRTDTQGNRNSPHKALNQKNQHKGSSNEKEFSN
VWQSLQSSGMPQKPPAHWQNNDGKSCGPVPHQHQLEGQNKQSQGNDPSNKLASGGNIRLL
KRNEDLNTALVQGPSNKASTEFEELIANLKISKDPEPAQHHLPKEPKSQSGEPLSPQSFA
MKGTLVLKEMLKIDSSGTSSAPDSTSANPSTQQQSKRRSSKKLAARINTPQADAPAPTAP
PPLAGQPPLLPSMATELGRVCMGLGMGPPEFAFLRNRQSLTVCQVKLSNGLLVHGPQCQS
ETEAKEKAALFALQRLNSLGSFPLPPPIFPGVQQMRPLAPHPSMFGQPAGGLLIPPQGFG
PLHWGMQFPHQGQPFYGGTFPGARASAPSAASGSHNQFVPLQVTKKRVSGRTKNQEAKQV
SGSSVYSGQAPGSGQAASALVPPSAPKTPPPISTHELADKTTPKTPRQNTNPHTPGSASK
RKHRKLAVNFEAAKVTD
NT seq
5094 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgcctaaattttatcgatggatatcggagcggtatccgtgtctaagtgaagtt
gtcaaggagcatcagatcccagagtttgacaacctatatttagatatgaatggcatcatc
caccagtgttcccaccccaatgatgaggacgtacacttccgtatttctgaagaaaagata
ttcgctgacatttttcactacctggaggtgctctttcggatcattaaacccaggaaagtg
ttcttcatggctgtcgatggagtcgcaccaagggccaagatgaaccagcagcgtgggaga
agattcaggtcagcgaaagaagccgaggagaaaatcaagaaggccttggaaaagggtgaa
gttttgcccacagaggccagatttgactctaactgcatcactcctggaacggatttcatg
gccaggctacaggaacagcttaaatattttgttcacaataaactgtccacagacaaatca
tggcagggagtgaacgtgtatttgtctggtcatgagacccctggtgaaggagagcacaag
atcatggagttcattcgctctgagaactccaaaccgggtcataacccaaacacaagacac
tgcctttatggtctggatgctgacctgataatgcttggcttgactagccatgagcctcat
ttttctctcctcagagaggaggtacgcttcggaggcaaaaagtcacaaaagaggataaca
gctcctgaggagacgacatttcacctgctccatctttcccttatgagggaatacattgac
tatgagttttcagagctcaggaataagatctcgtttgagtatgacctagagcggatcata
gacgactgggttctgatgggtttcctggtggggaatgacttcatccctcatcttcctcac
ctgcacatcaatcatgatgcattgccgctgctctatcgaacttacatcagcgtgctgccc
agtctggggggctacctgaatgaaaacggtcatctcaaccttgcccactttgagaagtac
ctcgagaagttgtcagattttgatcgcgagcacttcagtgaggtgtttgtggatctgaag
tggtttgagagtaaggtggggaacaaatacctgaatgaagcagctgggctggcagccgag
gaggctgatttcaaagacttgaagaagagtaagtcttcagatgactctctctgtctctct
gctcttgatggagtcagagaatctcacagcgctcaaggaagagaaggtgcagaggaggat
ggtgaggatgatgacatgtttgaaacagagtttcgacagtataagcgcacctactacatg
accaagatggatgttgaagtcgtctcagatgagtttttggccaatcaggctaaatgttat
gtggaggggatccagtggatcttgcattactactaccatggagtgcagtcctggagctgg
tattatccgtaccactacgcccccttcctttctgatgtgagaaacatctctagtctcacg
ctgacctttgatctggccaaacccttcatgccatttgagcagctcttggctgtcctgcca
tcagccagcaaagaccttcttccacagtgttaccagcacctgatgacctcactgagctca
cccattgttgagtattacccacaagacttcaaaactgacctgaacggcaaacagcaggag
tgggaagccgtggtgctcatcccgtttatcgacgagaaatgcttgttagctgctatggag
ccctacactcataaactgactccatcggagaaggccaggaacagacatactgagtgtgcg
gtctactgctttgataaagagctggactatgcctacagttcccccctcccccaactcttc
cccaacatcgttcactgtcatgtcaggcaaacgccaatcccgctggatgcatggcgtgta
tcaatggatcatgttgggcgcaggattgacagaggagcgctttatttctgcggcttcccc
acgttacagcatatccgtcataaattttataagaagaaaagtggagtattggtgtttcaa
caaagcagcagaggagagaacatgattctggagattttagcctcccaggaggtggtgcag
gtggaagatgttgcagtgctggttcttggaaagtctttgtttgtgaactggccccatttg
atggaagctcgagttgtagctgtttcagatggagaaacaaagttttttttagaagaaccc
tcaggatcacaggtgttgtatcttgagaacactccaccgcctactaaagtggcccatctg
actgataaagagcagaaggagtgggtcaaagaagtgcaaggcctctcagagcacttcagc
aaacgtaaaggcattgtgatcaatgagacggatgtggtggtttacgcccagctgctgaca
ggcaggaagtatgtaattggtcagaacggatcggtccatctggagaagcagtttgccaaa
caggtcctgccctttccataccaaaccattgtgaaggatatcaaaacctttgattcgtca
ttggcacgcttcaagacactggaggagttgtttcctccaggaaccgctgtctttatggtt
ggaaacccatattacggtgcaatgggtgatgtgcaagattctagtgatgtcatcagtgag
ggacgagtcagagtggtcttctctgtaccatgtgaacctcaacttgatgccttaatacag
aaccaacataaatactcggtgaagtactgtcccgggtacgtgctcgcctctcgccttggt
atcaccagctacctcgtctcaaggttctccggtagcatcttcattggaagaggatccaaa
aaaaatcctcatggagagcagaaagtcaatgtgggccttaatctcaagttcaacaagaag
aatgaggaagttcctggctataccaagagaacagagaaggagtggctctactctgctgct
gtggaggaactcttggctgaatacttagagagattttcagaggtgtttgactttgtagca
cgaaacagccacgatgacgtcttttacgaagatgacatctggcctggagaggatgagaat
ggggctgaaaagatccaggagatccagggctggttgaaaacccatccggtcagctctacc
tccagagcgtcatgtgatctgcagatcctagacgccggcattgtggagaagattgaggag
gagctggagaaaacgaaggcaaagaagatgaacaagaaagtgcgggtcactgtgaagccc
cacctgctttttaggcctctggagcagcagttcggtgtcattccagatcctgatgcagag
tatcatctgtttgaccgtgtggtcaatgtgagagagagcttctctgttccacttggcctt
cgaggaactgtcattggtatcaaaggagctgaacgtgaggctgaggttctgtacgaagtg
ctgtttgatgaggagtttgctggaggactcactgtcaggtgctctcctgggcgtggctat
cgactgccccccagtgccttaatcaacctgagccatggcagcaggaaggagcagggctca
cacaaactcactgccatcgtcaaaccccagccctcgtcctcatctcatctctcacacaag
agccagctgggtggccttaatcactcgccacgctcaccgtttatacctacgcagcagcag
aatggccgacaaagtttcaatctcaggactgacactcagggcaacagaaactcgcctcac
aaagccctaaaccagaaaaaccaacacaagggctctagtaatgagaaggagttcagtaat
gtatggcagtctcttcagagttcaggaatgccccagaaaccaccagctcactggcaaaat
aatgatgggaaaagctgtggaccggtgccacatcagcaccagctggagggacaaaataaa
cagagccaaggcaacgacccatccaacaaacttgcctcaggtggcaatattagacttctg
aagagaaatgaagatctgaatacggctcttgttcaggggccttcaaataaggcatctaca
gagtttgaggagcttatagccaatctaaagatctcaaaggatcctgagcctgcccagcac
catctgcctaaagagcccaagagccaatccggagagcctctttccccacagtcctttgcc
atgaagggaactctggtattgaaagaaatgttgaagattgacagctctggaacaagctct
gcccctgattctacttcagcaaaccccagcacccaacagcagagcaagagacgttccagc
aaaaaactagctgctcggataaacactccccaggctgacgctccagctccaactgctcct
cctcctctggctggacagccgcctctcctgcccagcatggccactgaactcgggcgggta
tgcatggggcttggaatgggaccaccagagttcgccttcctccgtaacagacagagtctg
acagtgtgtcaggtgaagttgtctaatggtctgctggttcacggtcctcagtgtcagtct
gaaactgaagccaaagagaaagctgctctctttgcccttcaacgattgaactcgttgggt
tctttcccactgcctcctcccatattccctggagtccagcagatgaggcctcttgctcct
cacccgtccatgtttggtcagccagcaggtggtcttctgatccccccacaaggctttgga
cctcttcactggggtatgcagtttccccaccaagggcagccattctatggaggtactttt
cctggagcacgtgcctctgcgccatcagctgccagtggatcccacaaccagtttgttccc
ctccaggtgaccaagaagcgagtttcaggcagaactaagaaccaagaggcaaagcaagtg
tcaggcagctcagtctattctggtcaggctccaggcagtggacaggctgcttcagcccta
gtgcccccatcagcccctaagacccccccacccatcagcacccatgagctagcagataaa
accacacccaagacacccaggcagaacaccaatcctcacacgcctggctcggcctccaag
cggaaacacaggaaactggcagtcaacttcgaagctgcaaaagtgacggactga
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integrated database retrieval system
