Ctenopharyngodon idella (grass carp): 127506639
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Entry
127506639 CDS
T08802
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127506639
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127506639
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127506639
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127506639
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Med13_C
Motif
Other DBs
NCBI-GeneID:
127506639
NCBI-ProteinID:
XP_051739220
LinkDB
All DBs
Position
24:complement(12218421..12238016)
Genome browser
AA seq
2392 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLITKPNFISTLCYAIDNPLHYQKSLKPSPHLFTQLSKVLK
LSKVQEVIFGLALLNSSNADLRGFAAQFVKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGSSGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPDKRDILMARIL
PDSADLNKTMMESSLADFMQEVGYGFCASVEECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIGLQSISNPVGGGIWSDGKDKSDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTY
ELDHPGFLIRDSKGLQIVVYGVQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVF
CFADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGHYEQVKQLFSFPIKH
CPDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIM
HSMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDK
WLTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPEKDQPKSAQLPPETLATMLACLQSCA
GSVSQELSETILTMVANCSNVMNKARQPPPGVLPKGRAPSTSSLDAISPVQMDPLSAMGS
LSLGVSSTSHTPSMQGFPSLQGSAFSNPQSPAKAFSNLPNPNPSTAFPGINSLSSQLQGP
LSTSLTGLGSGLGMPAVSSDPFGTRKMSTPGLNPPTFQQSKMKASDLSQVWPEANQHFSK
EIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRFF
PQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAALDRFK
NRLKDYPQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQAQA
QSQTPKAPQPGQASTLVTTTTTTTTVAKTTTITRPTAVGPKKDVPPSINTTNIDTLLVAT
DQTERIVEPPENVQEKIAFIFNNLSQSNMSQKVEELKETVKEEFMPWVSQYLVMKRVSIE
PNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMI
TLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIFRPQNPWTMGI
MNVLAELHQEHDLKLNLKFEIEVLCKNLSLDISELKPGNLLRDKEKLKNLEEQLSAPKKE
TKPPEEMLPIVTTDSVSFTATPSTPATTTTCTATGPPTPQFSYHDINVYALAGLAPHINI
NVNIPLLQAHPQLKQCVRPAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESH
MRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMMEEAAARIA
QDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPMVLTYQAERMPEQ
IRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWPTDDVAHIYDKC
ISDLEQHLHAIPPALAMNPQTQAIRSLLEAVVMARNSRDGIAALGLLQKAVEGLLDATSG
ADTDLLLSYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNH
LVNMQQYDMHLAQSMENGLNYMAVAFAMQLVKLLLVDERSVSHITEADLFHTIETLMRTS
AHSRANAPEGLPQLMDVVRSNYEAMIDRHHGGPNFMMHSGISQASEYDDPPGLREKAEYL
LREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQA
EQQHPTTSPAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVGMLTAVLGIV
VGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTK
APGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQI
LYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNL
KVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVVHSRIVSN
EPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRY
LFLNAIANQLRYPNSHTHYFSCTMLYLFAEANAEAIQEQITRVLLERLIVNRPHPWGLLI
TFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7179 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacctggtggacaattta
actaagaaaaactacagagccagccagcaggaaatacaacatattgtgaatcgtcacggc
cctgaggcagaccggcatttattacgctgtctcttttcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccaccagacacaatttctaatccaggagtgtgtgtct
cttattacgaaaccaaattttatttcaacgctttgctacgccattgacaatcccctgcac
tatcaaaagagtttgaaaccgtcacctcatttatttactcagctgagtaaagttctcaag
ctaagcaaggttcaagaggtgatttttggccttgctctgctgaactccagcaacgcagac
cttcgagggtttgctgctcaatttgtgaagcagaagctccctgaccttctccgctcgtac
gtggacgcggacctcggagggaatcaggaaggtggcttccaggacattgccatagaggtt
ctgcatctgctcctctcccatcttctgttcggtcagaagggctcgagcggagtcggacaa
gagcagattgacgcgttcctcaaaacactgtgcagagatttcccgcaggagcgctgtcct
gtggtgctcgcaccactgctgtaccctgacaaacgggacattctcatggccaggatcctg
ccagactctgcagatttaaataagaccatgatggagagttcccttgctgacttcatgcaa
gaagttggctatggcttttgtgcgagtgtcgaagagtgcaggaacataatcctgcagtat
ggggtgcgagaggtgacagccagtcaggtggccagagtgctaggcatgatggcccgcact
cactccggtctgtccgacggcattggcctacagtccatttccaatccagtgggtggaggg
atctggagtgatgggaaggacaagagtgatggttctcaggcccacacctggaatgttgaa
gttctgattgatgtggtcaaagaagtgaaccccaatctgaattttaaagaggtgacctat
gagcttgatcacccaggctttctgatccgggacagtaagggtcttcagatagtggtctat
ggggtccagaggggtctgggaatggaggtgttcccagtggatctcatctacagaccatgg
aagcatgcagaaggacagttatcgttcattcagcactccctgatgagtcctgaagtgttc
tgctttgctgactacccctgtcatacggttgccattgacatcctgaaggccccacccgag
gatgacaacagagagatagccacatggaagagcttggacctagtggagagcctcttacgc
ctctctgaagttgggcattatgaacaggtgaagcagctctttagcttccccatcaagcac
tgcccagacatgctggtgctggcgctgctgcagatcagcacctcctggcacaccctgcgt
catgagctcatctccaccctcatgcccatcttcctgggcaaccaccccaactctgccatc
atcttgcactatgcctggcatggacagggccagtccccctccatccgccagctgatcatg
cactctatggccgagtggtacatgagaggagagcaatacgaccaggccaagctatctcgc
atcctggatgtggctcaagacttgaagtctctatcgatgctgctgaatggtactccattt
gcctttgttattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgacaaa
tggctcactgacaaaatacgagagcacggggagccgttcatccaggcgtgcgtcacgttc
ctgaagagacgatgtccctctatcatgggtggtttggctccagagaaagaccagccgaag
agtgctcaacttcctcctgaaacactggctacaatgcttgcatgtctgcagtcttgtgct
gggagtgtgtctcaagagctatcagagacaatcttgaccatggtggccaactgtagcaat
gtgatgaacaaggcccggcagccgccaccaggagtcctgccaaagggacgagctcccagc
accagcagcttagatgctatctcacctgttcaaatggaccctctctctgcgatgggctct
ttgagtttaggtgtctcatccacatctcataccccgagcatgcaaggattccccagcctg
caaggctctgcctttagtaacccccagtccccagccaaagccttctcaaacctaccaaac
cctaaccccagcacagctttcccaggaatcaactccctctcttcgcagctccaaggtcct
ctgagcacaagcttgactgggcttggctcaggtttgggaatgcccgccgtcagcagcgat
cccttcggcaccaggaagatgagcacaccggggctaaacccgcccacatttcagcagagt
aagatgaaggcctctgacctttctcaggtgtggcccgaggcaaaccagcactttagtaag
gagattgacgatgaagcaaacagctatttccaacgcatctacaaccatccgccacacccc
acaatgtctgtggatgaggtgctggaaatgttgcagagatttaaggactcaaacatcaag
cgggaacgggaagtttttaactgcatgctgaggaatctgtttgaggagtaccgattcttc
cctcagtatccagacaaagagctgcacatcaccgcatgcctctttgggggaatcattgag
aagggcttggtgacgtacatggcgctgggcttggccttacgatatgtcctggaagcttta
cgcaaaccttatggatcaaagatgtattactttgggatcgctgcactagatagatttaaa
aatagactgaaggactatccccagtactgtcagcacttggcgtcaatagcccatttcctg
cagttcccgcaccatttacaagagtatatagagtatggccagcagtccagagaccctcct
gtgaagatgcaaggctcaattaccaccccaggtagcctggctctagcccaggctcaagct
cagtctcagacccctaaagccccccaacctggccaagccagcaccttagtgaccacaacc
accacgaccaccaccgttgccaaaaccaccaccatcacgagacctacagctgttggaccg
aagaaggacgtgccaccttcaatcaacaccacaaacattgacaccttgttggtggccaca
gaccagactgaaaggatcgttgagcccccagagaatgttcaggagaagattgcgttcatc
ttcaacaacttgtcccaatcaaacatgtcacaaaaggtggaggagctgaaagagactgtg
aaagaagaattcatgccctgggtctctcagtacctggtcatgaagcgtgtcagcattgag
cccaacttccacagcctgtattctaacttcctggacacactgaaaaacccagagtttgtt
aaaatggttctcaatgagacttacagaaacatcaaggtccttcttacctctgataaggca
gctgctaacttctcagatcgatccctgctgaagaatttgggtcactggcttggaatgatc
accctagctaaaaacaaacccatcctttacacagatctggagctaaagtctctcttgctg
gaggcttatgtgaaaggccagcaggagttactgtatgttgtcccctttgtggccaaagtc
ttggaatcaagtctgcggagcgtgatcttcagaccgcagaacccttggaccatgggcatc
atgaatgtattggctgagctccaccaagaacatgacttaaagcttaacctcaagtttgag
attgaggtgctctgcaagaatctgtctctggacatcagcgagctgaaaccaggaaacctg
ctgagagacaaagagaagctgaagaatttggaggagcagctctctgcaccaaagaaagag
accaagcctcctgaagagatgctgcctatagttactacagactctgtttcatttacagct
actccttcgactccggccaccaccacaacctgtactgccacggggccacccacgccacag
ttcagctaccatgacatcaatgtgtacgccctggctggccttgccccacacatcaacatc
aatgttaacatcccactgctgcaggcccaccctcagttgaagcagtgcgtgagaccagca
attgagcgtgctgtacaggagcttgtgcacccagtggtggaccgatcgatcaagatcgcc
atgaccacctgcgagcagatagtccggaaggactttgcgctagactccgaggagtctcac
atgcgtgtggctgcccaccacatgatgcgcaacctgaccgccggcatggccatgatcacc
tgtagagagccgttgctcatgagcatcgccaccaacctgaagaacagctttgcagcagct
cttagggctcccacaccccagcagagagaaatgatggaagaggcggctgctcgcatcgca
caggacaactgtgagctcgcgtgttgctttatccaaaagacagcagtggagaaagctgga
cctgagatggacaagagactggcaactgaatttgagctgaggaaacacgctcgccaagaa
ggccgccgctactgtgatcccatggttctcacctatcaggcggagcgtatgccagagcaa
atcagactgaaggtcggtggagttgatcctaaacagctggctgtttatgaggagttcgcc
agaaacgttcctggcttcctacccagtaacgacctgtctcagcccactggtttccttgcc
caaccaatgaagcaacaggcatggcccactgatgatgtggctcacatctacgataagtgc
atttcggacctggagcagcacctgcacgctattccacctgcgctggccatgaatccacag
acccaggccatacgcagcctcctggaggcagttgtcatggctaggaactcccgtgatggc
attgccgcattgggccttttgcaaaaggctgtggagggtctgctagatgccaccagtggt
gctgatactgatctgttgctaagctacagggagtgccacctgttggtgctgaaagctcta
caggatggtcgtgcctacggcccacagtggtgcaacaaacaaatcaccagatgcctgatt
gagtgcagagatgaatacaagtacaacgttgaggctgtagagctcctcattagaaatcac
ctggtcaacatgcagcagtatgacatgcacctggctcagtccatggagaacggactgaac
tacatggctgtggcgtttgccatgcagctagtgaagctactgctggttgatgaacgcagc
gtgagccacatcacagaagcagatctcttccacaccatcgagactctgatgaggaccagt
gcccactccagagccaatgctcctgaaggtttgccccagctgatggatgttgtccgctcc
aactacgaggccatgatcgatcgtcaccatggtgggccaaacttcatgatgcactctggg
atttctcaagcctctgagtatgatgacccaccaggtcttagagagaaggcagagtacctg
ctgagagaatgggtcaacctgtaccactcagcagctgcaggaagggacagcactaaggcg
ttctctgcatttgtcggacagatgcaccagcagggcatcctgaagaccgacgacctcatc
actcgcttcttccggctgtgcacagagatgtgcgtggagatcagttaccgcgctcaagct
gaacagcagcaccccaccaccagccctgccattatcagggccaagtgctaccataacctg
gacgcttttgttcggctcatcgcccttctggtcaaacactctggagaggccaccaacacg
gtcaccaaaatcaacctcctcaacaaggttggaatgcttacagcggttctgggcattgtg
gtgggtgtgttgatccaggatcacgatgtgaggcagacggagttccagcagcttccatac
caccgaatcttcatcatgcttctgctggagcttaatgcaccggagcatgtgctggagacc
atcaacttccagaccctcactgccttctgcaacaccttccacatcctgaggccgactaaa
gcacctggttttgtgtacgcttggctggagctcatctctcaccgcatcttcattgccagg
atgcttgcacacaccccacaacaaaagggttggccaatgtatgcccagctgcttattgac
ttgttcaagtatcttgcacccttcctaaggaatgttgaactcaacaaacctatgcaaatt
ctctacaagggaacacttcgtgtgctgcttgtcctgctacatgacttcccagaattcctg
tgcgactaccattatggcttttgcgatgtcatcccgcccaactgcatccagctgaggaac
ctgatcctgagtgccttcccccgcaacatgaggcttccagaccccttcacccctaatctg
aaggtggatatgctgagcgaaatcaacatcgctccccgcatcctcactaacttcaccggt
gtgatgccgtcccagtttaaaaaggatcttgactcctacctcaagacccgctctcctgtc
accttcctctctgagctgcgcagcaacctgcaggtagttcacagcagaatcgtgtccaac
gagcctggaaaccgctacaacatccagctgatcaacgctcttgtgctgtacgttggaacc
caggccattgcccacatccacaacaagggcagcactccctccatgagcaccatcacgcac
tcagcacacatggacatcttccagaaccttgcagtcgatctagacactgaaggccgctat
ctgttcctgaatgcgatagccaatcagctgcgttatccaaacagccacacacactacttt
agttgtaccatgctgtatctgtttgccgaggccaacgctgaagccattcaagagcagatc
accagggtcctgctggagaggctgattgtgaacaggccgcacccatggggtctgctcatc
accttcatagagctgatcaagaaccctgcctttaagttctggagccatgattttgtgcac
tgtgccccagagatcgagaagttgttccagtcggtggctcagtgctgcatggggcagaag
caggcccagcaggtgatggagggaacaggtgccagttag
DBGET
integrated database retrieval system
