Ctenopharyngodon idella (grass carp): 127512304
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Entry
127512304 CDS
T08802
Name
(RefSeq) transportin-1 isoform X1
KO
K18752
transportin-1
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127512304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127512304
03009 Ribosome biogenesis [BR:
cide03009
]
127512304
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
127512304
Ribosome biogenesis [BR:
cide03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
127512304
Pre-60S particles
127512304
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
TPR_IMB1
HEAT_GCN1
HEAT_2
Arm
Vac14_Fab1_bd
IBN_N
Cnd1
TOR1L1_N
TPR_IPO5
HEAT_EF3_N
TPR_DNAAF5
HEAT_MROH2B_C
PDS5
Adaptin_N
CEP104-like_TOG
HEAT_GCN1_C
MMS19_C
UNC45-central
TPR_TTI1_C
Dopey_N
VPS15-like_hel
DUF3689
Motif
Other DBs
NCBI-GeneID:
127512304
NCBI-ProteinID:
XP_051749042
LinkDB
All DBs
Position
5:complement(33301233..33334573)
Genome browser
AA seq
891 aa
AA seq
DB search
MECQWKPDEQGLQQILQLLKESQSPDTSTQRSVQQKLEQLNQYPDFNNYLIFVLTKLKTE
DEPTRSLSGLILKNNVKAHYQNFPNGVSDFIKNECLQNIGDSSPLIRATVGILITTIASK
GELQNWPELLPKLCLLLDSEDYNTCEGAFGALQKICEDSAEILDSDMLDRPLNVMIPKFL
QFFKHSSPKIRSHAIACVNQFIISRTQALMLHIDPFIENLFGLAGDEEPEVRKNVCRALV
MLLEVRLDRLLPQMHNIIEYMLQRTQDQDENVALEACEFWLTLAEQPVCKEVLCGHLPKL
TPVLVNGMKYSEIDIILLKGDVEEDEAVPDNEQDIRPRFHRSRTVAQQHEGGDSIEDEED
DDDDLDDDETISDWNLRKCSAAALDVLANVFRDDLLLHILPLLKELLFHPEWLIKESGIL
VLGAIAEGCMQGMIPYLPELIPHLVQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLK
PLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLL
ILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNQLKDEDKDLFPLLECLSSVATALQS
GFLPYCEPVYQRCVNLVQKTLAQAVLHQTQPEFYEAPDKDFMIVALDLLSGLAEGLGGNI
EQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIANFMPILGNNLNP
ELISVCNNATWAIGEISIQMGSEMQPYVLMVLQQLVEIINRPNTPKTLLENTAITIGRLG
YVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMITVNPGGVVQDFIFFCDAV
ASWMNPKDDLREMFYKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYGV
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atggagtgccagtggaaacccgacgagcagggacttcagcagatattacagctgctcaag
gaatcacagtccccggacacatctacgcaacgatccgtccaacaaaaacttgagcagctc
aatcaatacccggacttcaacaactacctaatatttgtgctcacaaagctaaagacagaa
gatgagcctactcgctctctcagtggtctcattttgaagaacaatgttaaggcccattac
cagaacttcccgaacggtgtgtctgacttcatcaaaaatgaatgtctgcagaacattgga
gactcttcaccactcattagagccacagtgggtattctgatcacaactatagcctctaaa
ggggagttacagaattggccggagcttctacctaaactctgtttactgctggactcggag
gactataacacttgtgaaggggcttttggagctctgcaaaagatctgcgaggactctgcc
gagatcctggatagcgacatgctggaccgcccgctcaacgtgatgatccctaagttcctg
cagtttttcaagcacagcagccccaagatcaggtctcacgccattgcctgtgtcaaccag
ttcatcatcagcagaacacaggctctaatgctgcacatagatcctttcattgagaacctg
tttggacttgcaggtgatgaggagccagaagtgaggaaaaacgtgtgcagagctttagtc
atgcttttggaagtccgactagaccgtctccttcctcaaatgcacaacatcatcgagtac
atgttgcagaggacacaggatcaagatgagaatgttgctttggaggcttgtgagttttgg
cttacacttgctgagcaacccgtgtgtaaagaggttctgtgtggacacctgcctaaattg
acaccagttcttgtgaatggaatgaaatactctgaaattgacataatcctgttgaagggt
gatgttgaagaggatgaagcagtcccagacaatgagcaggacattcgcccaaggttccat
cgttcacgcacagttgcccaacaacacgagggaggagactccattgaggacgaggaggat
gatgacgatgatttggatgatgatgaaacaatatcagactggaacttgaggaaatgttct
gcagctgcactggatgtcctggcgaatgttttcagagatgatttgctgttgcatattctt
cctctactgaaagaactactgttccatccagagtggcttattaaagagtcgggcatactt
gtactgggagccattgctgaaggctgtatgcaagggatgatcccctatttgccggagttg
attcctcatctggtacagtgtctgtctgataagaaggcgctggtacgatccatcacttgc
tggactctgagccgctatgcacactgggttgttagccagccccccgacacctacctcaaa
ccgctcatgactgaactgctcaaacggatacttgacagcaacaaacgcgtccaagaggcc
gcctgcagtgcctttgctacccttgaagaggaggcttgcactgagctggtgccgtacctt
gcttatattttggacacgttggtctttgctttcagtaaataccagcacaagaacctactc
attctctatgatgccattgggactctggctgactctgtgggccaccatctcaacaaacca
gaatatatacagatgctgatgcctccattgatacaaaaatggaaccagctaaaagatgaa
gataaagacctctttcccttactggagtgtctctcatctgtggccaccgcccttcagagt
ggcttcctgccatactgtgagcctgtctaccaacgctgtgtcaacctggtccagaaaaca
ctcgcccaggctgtgctccaccagacgcagcctgagttttatgaagctcctgataaagat
ttcatgattgtggctctggatctgctcagcggattagcagagggtctcggtgggaacatt
gaacagcttgttgcccgtagcaacattctcactctcatgtaccagtgcatgcaggataaa
atgccagaggttcgacagagttcttttgccctattgggagatttgaccaaagcctgtttc
cagcatgtcaaaccttgcattgctaacttcatgcctatcttaggcaacaacctgaaccca
gaattgatatcagtctgcaacaatgcaacatgggccattggagaaatatcgattcaaatg
ggttctgagatgcagccgtatgtcctgatggttttacagcagcttgtggagatcataaac
agacccaacacacccaagactctgctggagaatacagcaataacaattggtcgtcttggt
tacgtttgtcctcaagaggtggcacccatgctacagcagtttataagaccctggtgcacc
tctcttcgcaatataagagacaatgaagaaaaagactctgcgttcagaggaatctgcacc
atgatcacggtcaaccctggtggtgtggtgcaggactttatatttttctgtgatgctgta
gcatcctggatgaacccaaaagacgatcttcgagaaatgttctataagatcttgcatggg
tttaagaaccaggttggagacgagaattggagacgcttttctgaccagtttccccttcca
ctcaaagagagacttgcagccttctatggggtgtag
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