Ctenopharyngodon idella (grass carp): 127522552
Help
Entry
127522552 CDS
T08802
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 3
KO
K05044
solute carrier family 6 (neurotransmitter transporter, GABA) member 11
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
127522552
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cide02000
]
127522552
Transporters [BR:
cide02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
127522552
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
127522552
NCBI-ProteinID:
XP_051768606
LinkDB
All DBs
Position
11:16300621..16327655
Genome browser
AA seq
617 aa
AA seq
DB search
MTAEKTIPIINGKADDTMDPEASNPSAVRSNDKKVVNERGQWNNKIEFVLSVAGEIIGLG
NVWRFPYLCYKNGGGAFFVPYVIFFVCCGIPVFFLETALGQFTSEGGITCWRKVCPLFEG
IGYATQVIEAHLNVYYVVILAWAIFYLFNCFTTELPWASCGHYWNTENCVDFTNESIANF
TNPFSTSPVIEFWERRVLKISSGIEEVGSLRWELAICLLLAWIICYFCIWKGPKSTGKVV
YVTATFPYFMLLILLLRGITLPGAANGIKFYLYPDISRLSDPQVWVDAGTQIFFSYAICL
GCLTALGSYNSYNNNCYRDCIMLCCLNSGTSFVAGFAIFSVLGFMAYEQNVPIEAVAESG
PGLAFIAYPKAVTMMPWSPLWACLFFMMLIFLGLDSQFVCVESLVTAIIDMYPKTFRVGY
RRELLILGMSVASFLLGLIMLTEGGMYVFQLFDSYAASGMCLLFVAIFESICIGWIYGGD
RFYLNIEDMIGYKPIFFIKWCWKYFTPGICAGIFLFFLIKYKPLKYNNVYTYPDWGYGIG
WMMAMSSMVCIPLGIIFQIWKTEGTFRERIKKLTTPSSDLKMRGRLASRGPCAINDADAK
MRADGKISTITEKETHF
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgacagccgaaaagacgattcccataataaatggaaaagcagatgatacgatggacccc
gaagcgtcgaacccgagcgcagtgcgcagcaatgataagaaggtagtgaatgagagaggg
cagtggaataataagattgagtttgtgctgtcagtggctggagagattatcgggcttggc
aacgtttggaggttcccatatctgtgttacaagaacggcggaggtgctttctttgtgcct
tatgtcatcttcttcgtctgctgtgggatcccagtcttcttcttggaaacagcactaggt
cagttcactagtgaagggggcatcacatgttggcgaaaagtctgtccgctctttgaaggc
attggttatgcgacccaagtcatcgaagcccacctgaatgtttattatgtggttatattg
gcttgggccattttctacctgttcaactgctttacaacagagctgccctgggcgtcgtgt
ggtcactattggaacacggaaaactgtgtggattttaccaacgaaagcattgccaacttc
accaacccattttccacatcaccagtcatagagttttgggaacgccgtgttctcaagata
tcctctggaattgaagaagttggcagccttcgctgggaactcgctatctgtctactttta
gcctggatcatatgctatttctgcatttggaaaggtccaaaatcaactggaaaggtggtg
tatgtcactgcaacctttccttatttcatgctgttgatccttcttcttcgaggaatcaca
ttgccaggagctgctaatggaattaagttctacctgtaccctgatatctctcgtctgtca
gaccctcaggtgtgggtggatgcaggcactcagatcttcttctcgtatgcgatatgtctg
ggttgtctgacggctctcggcagctacaacagctacaacaacaactgctacagggactgc
atcatgctgtgctgtctgaacagtggcacgagttttgtggcaggatttgccatcttctcc
gtcttgggcttcatggcatatgaacagaatgtgccaatagaggcagtggcagagtcaggt
cctggtctagcgttcatagcataccctaaggctgtgaccatgatgccgtggtctccgctg
tgggcctgcctcttcttcatgatgctcatcttcctcggacttgacagtcagtttgtatgt
gtggagagtcttgtgaccgcgatcattgacatgtatcccaaaactttccgcgtgggctat
cggagagagcttctcatcctgggaatgtctgtggcctccttcttactgggtctaataatg
ttgacagagggtggcatgtacgtgttccagctctttgactcatatgcagccagtggcatg
tgtttgttgtttgtggccatctttgagtccatctgcattggctggatctatggtggtgac
aggttttatttgaacattgaggacatgattggatacaaacccatcttcttcatcaaatgg
tgctggaagtacttcacacccggcatctgtgctggcatctttctgttcttcctgatcaag
tacaaaccgctgaagtataataatgtgtacacgtatccagactggggttatgggatcggc
tggatgatggccatgtcctctatggtttgcatccctctgggaatcatattccagatctgg
aaaacggaaggaactttccgtgagaggatcaagaagctgaccacacccagctctgatctg
aaaatgaggggacgcctcgcctccaggggtccttgcgctatcaatgatgctgatgccaaa
atgagggcggatggcaagatctccaccatcacagagaaggagacacatttctaa
DBGET
integrated database retrieval system
