Carya illinoinensis (pecan): 122274745
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Entry
122274745 CDS
T08745
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03018
RNA degradation
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122274745
09123 Folding, sorting and degradation
03018 RNA degradation
122274745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122274745
03041 Spliceosome [BR:
cill03041
]
122274745
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122274745
mRNA degradation factors
5'-3' decay
Lsm complex
122274745
Spliceosome [BR:
cill03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
122274745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
122274745
NCBI-ProteinID:
XP_042939696
LinkDB
All DBs
Position
8:complement(12691308..12695809)
Genome browser
AA seq
150 aa
AA seq
DB search
MLPLSLLKSAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRSDRRPHGVARGRGRGREDGAGGRQLKGIGRGLDD
GGAKGSGGGRGRGGSGGKAGGNRGAGRGRG
NT seq
453 nt
NT seq
+upstream
nt +downstream
nt
atgcttccactttctctacttaagagtgcccaggggcacccaatgttggtggaactgaaa
aatggggagacctataacgggcatttggtcaactgtgatacttggatgaacattcatctt
cgtgaagtcatctgtacctctaaagatggagatagattttggcgaatgcctgaatgctac
atccgtgggaatacaatcaagtacctccgagtacctgatgaggtgatagataaggttcag
gaagaaaccaagagccgctcagataggagaccacacggggttgcgcgcggaagaggacgg
ggtagggaggatggtgctggtggacgccaactaaaaggaattggacgtggtttggatgat
ggaggtgctaagggttcgggaggaggccgaggcagaggtggatccggtggaaaggctggt
ggaaacagaggtgctggacgtggccgtggctga
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