Carya illinoinensis (pecan): 122292098
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Entry
122292098 CDS
T08745
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122292098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122292098
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122292098
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122292098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
122292098
NCBI-ProteinID:
XP_042956248
LinkDB
All DBs
Position
13:3042402..3082322
Genome browser
AA seq
2409 aa
AA seq
DB search
MLKFSSTVSSQIRFLLQSLNESNADAVLGELLRFVEYEIEGSMMLLQTCIDHLNFYSTDT
KNMLLDSVVESIFKYLLDKPNFSTVFFESLRDTEINEGTLENFSNALHLSVSEKIGFGLA
LSDSENLDTRMSGKNFCMSQIQELCANPALANSSEEIQNIVVFLQRSDGLSKHVDFFMQM
LSLVKSNDVTPFVLTPLLSDELREANFLRNVDVFHVSGEDDFDSILAEMEKEMSMGDIMK
ELGYGCTANTSQCMEILSLLLPLTEITVAKILGTIARTQAGLEDNLNTFSTVSLALGCST
LFDLPSLSSWNIDVLIDSIKQLAPGTNWIRVIENMDHEGFYFPNQEAFSFFMSVYRRACQ
EPFPLHAICGSVWNNTEGQLSFLKYAVLAPPEVFTFAHSTRQLPFLQAYIDAVHGNKLQL
GHASHAWLCLDLLDVLCQLSESGHATSVRSMLENPIKHCPEVLLLGMAQINTAYNLLQYE
VSLTVFPIIVKNPMGNGMILHLWHVNPNLVLRGFVDSVNCDPDGMTRILDICQELKIISA
VLDMLPSYYAIRLAALASRKELVDLEKWLSYNLNTYKDIFFEECLNFLKEIQFRGSQDFS
PKRFHHSGAVLNLYVETSSTFVKVLKAHASSINSSLLAEEMEKLQATIMDSNPQLQNGGA
ATDSSASDGYADDIEREANSYFHEMFSGQLTIDAMVQMLARFKESSVRREQLIFECMIAN
LFEEYRFFPKYPERQLKIAAVLFGSVIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFG
TLALEQFVDRLIEWPQYCNHILQISHLRGTHSELVAFIEQALARISSGHSDTDGGSHASL
VNHHGSTQSASGNLELNGSSIIQPGQQLSAPLQLQQRHESLEDRHKATAASSNDVKPLVS
SIGQSSAVHLGDASMQKSQNAFSAPTLLSSSSGFVRPSRGVTSTRFGSALNIETLVAAAE
KRETPIEAPASEIQDKISFIINNISAANIEAKGKEFTEIFKEQYYPWFAQYMVMKRASIE
PNFHDLYLKFLDKVNSKALSKEIVKATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKL
TIGRNQVLRAREIDPKSLIMEAYEKGLMIAVIPFTSKVLEPCQSSLAYQPPNPWTMGILG
LLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDVAPTSLLKDRKREVEGNPDFSNKDAGAS
QPQLVAEIKSGMISSVNQVELPLEVASASNSGGHSHFLSQYAASLHLPSGTLMEDEKLSA
LGLADQLPNAQGLMPATPSQSPFSISQLPAPIPNIGTHVIINQKLSALGLHLHFQRVVPI
AMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIFNAAHLMVASLAGSLAHV
TCKEPLRGSISSQLRNSLQGLSTASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTID
GEIAQQLALRRKHREGVGPTYFEANMYTPGSMGVVPEALRPRPGHLSLSQQRVYEDFVRL
PWQNQSSQSSHAMPSGPASSGSTGLTNTYGSASGLLNLGSSAASGSTGFETLSRLQDESM
ESSSALHLSGSSIHIGVADGITQLSSENDSATASASELHSLDSSDVAKESGTASQPLPSP
VATERLGTSISDPLLTTGDALDKYQIVAQKLEALLKNDGKEAEIQGVIAEVPEIILRCIS
RDEAALAVAQKVFKGLYENGSNNIHASAHLAILTAIRDVCKLVVKELTSWVLYSDGERKF
NKDVTVGLIRRELLNLAEYNVYMAKHIDGGRNKAATEFSISLLQSLVIEESRVISELHNL
VDALAKVAAKPGSPESLQQLIELVKNPATGVVAVSGFNIGKEDKSRQLKDKKAPVQSTAS
REDYNNAESLEPDPVGFGEQVSLLFAEWFRICELPGSNDAASANFISQLHQNGLLKGDDM
TDRFFRLLTEISVAHCLSSEVINSATLQSTPQVQNISFLAVDMYAKLVFSILKGPSKLFL
FSKILAVTVRFIQKNAEEKKESFNPRPYFRLFINWLLDLSSLDPVIDGANVQILAAFANA
FHALQPLKVPAFSFAWLELVSHRSFMPKMLTVNGQKGWPYIQRLLVDLFQFMEPFLRNAE
LGMPAHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLP
DPSTPNLKIDLLPDIGQSPRILSEVDAALKAKQMKADVDEYLKTRQPGSFLTELKQKLLH
LPNDAAAAGTRYNVPLINSLVLYVGMQAIQQLQPKTPHSQSTSNTVPLAVFLVGAALDIF
QALIADLDTEGRYLFLNAVANQLRYPNTHTHYFSFILLYLFAESNQEIIQEQITRVLLER
LIVNRPHPWGLLITFIELIKNPRYNFWNRTFIRCAPEIEKLFESVSRSCGGPKSVDESMV
SGWASDNAH
NT seq
7230 nt
NT seq
+upstream
nt +downstream
nt
atgttgaagttttcgtcaacggtgtcgagtcagattcggttcttgctccagagcctcaac
gaatccaacgccgacgccgttcttggcgagctccttcggtttgtagaatatgaaattgag
ggaagcatgatgctgcttcaaacatgcatcgatcatctgaacttttacagcacagataca
aagaacatgctgctggattcagttgttgagtcaatttttaagtacttgttggacaaacca
aattttagcacagtgttttttgaatcgctaagggatacagagataaatgaaggaactcta
gagaatttctctaatgcactacacttgtctgtatctgaaaaaattggctttggccttgct
ttgtcggattctgaaaatcttgataccaggatgtctggaaaaaatttttgtatgtctcag
attcaagaattgtgtgccaatcctgctttggctaattcttctgaggaaattcagaatatt
gtcgtgttccttcagcggtctgacggcctttccaagcatgtagatttctttatgcagatg
ttatctttggtgaagtctaatgatgtcaccccatttgttttaactccattgctttcagat
gaattgcgcgaggccaactttctgaggaatgtggatgtgttccatgtatctggagaagat
gattttgattctattttagcagaaatggagaaagaaatgagcatgggagatattatgaag
gaactaggttatggatgcacagcaaacacatcacaatgcatggaaattctctctcttttg
ttgccactgacagagattactgtggctaaaatacttggtacaattgcccgcacccaagct
ggtcttgaggacaatctgaacacattctcaacagttagcctggctctgggttgcagtact
ttgtttgatcttccatcattgagctcctggaatattgacgttcttatagattcaatcaag
caacttgctcctggtaccaattggatacgagttattgaaaatatggaccacgaggggttc
tactttcccaatcaggaggcattctctttttttatgtctgtatataggcgtgcgtgccag
gagccgttccctctccatgccatttgtgggtctgtttggaataatactgaggggcagcta
tcttttcttaaatatgctgttttggcaccaccagaagtatttacgtttgcccattcaaca
aggcagctgccattcttgcaggcctatattgatgcagtgcatggaaataagcttcagctt
ggacatgctagtcatgcatggttgtgtcttgatctcttggatgtactatgtcaactatct
gagagtggtcatgccacttcagttcgatcaatgcttgaaaatcctattaaacactgtcct
gaagtcttacttctcgggatggcacaaattaatactgcttataacctcctccagtatgaa
gtgtcgctcaccgttttcccaattatagttaaaaatcccatgggtaatggaatgattctt
cacctctggcatgttaaccccaatttggtattgcgaggatttgtagattctgtaaactgc
gatccagacggtatgacaagaatattggatatctgccaagagctaaagattatatcagca
gtgttagatatgctgccttcttattatgccataagattggcagctcttgcttcacggaaa
gagctggtagaccttgagaagtggctcagctataatttaaacacatataaagatattttc
ttcgaggagtgcctcaacttcttaaaggagattcagttccgtggatcacaggatttttcc
ccgaaacggttccatcactctggtgctgtcttgaatctttatgtggagacaagttctacc
tttgtgaaggtccttaaagctcatgccagctcgattaactctagcttgcttgctgaggaa
atggaaaagctgcaagcaacaattatggattctaatcctcagttgcagaatggtggggct
gctacagattcttcggcatcagatggatatgcggatgatattgagagagaagcaaactct
tacttccatgaaatgttttctggtcagttgaccattgatgcaatggtccaaatgcttgct
cgattcaaggaatcttctgtgagaagggaacaattaattttcgagtgcatgattgcaaat
ctttttgaggagtacagattcttccccaagtatcctgagaggcagcttaaaattgctgca
gttctgtttggctctgttatcaagcaccaacttgtgactcatcttacattagggattgct
ctgcgtggtgttttagatgcattacgcaaacctgccgactcaaaaatgtttgtgtttggg
actctggcattggagcagtttgtggatcgtttgattgaatggccacagtattgcaatcat
atattgcagatatcccatctgcgtggtactcattcagaacttgttgctttcatcgaacag
gctcttgccaggatttcatctggccattcagacacagatggaggcagccatgcttctctt
gttaatcaccatggttctactcagtctgcatcgggaaatttggagttaaatggctctagc
atcatacagcctgggcagcaactctcggccccactacagcttcaacagagacatgaaagt
cttgaggatcgtcataaagccactgctgcatcatctaacgatgtgaagcctctagtgtct
tccatagggcaatcttcagctgttcatttaggcgatgcttctatgcagaagtcacagaat
gctttcagtgctccaacactgctgtcttcttcatctggttttgtccgtccttctcgagga
gttacttctaccaggtttggctctgctctgaacattgaaacacttgttgctgcagctgag
aaaagagaaactcccatagaggctccagcatcagagattcaagacaaaatatcttttata
ataaataacatctcagctgctaatattgaagctaaaggaaaagaattcactgaaattttt
aaagagcagtactatccctggtttgcccaatatatggttatgaaaagggcaagcattgag
ccaaattttcatgacttgtatttgaagttcctggacaaggttaactcgaaggctttgagt
aaagagattgttaaagccacttatgagaactgcaaggttcttttaggatcagagcttata
aagtcaagttccgaagaacgttcactgctaaaaaacttaggtagttggctggggaagcta
acaattggaaggaatcaagttttaagggctcgtgagatagatcctaaatctttgattatg
gaggcatatgagaagggattgatgattgcagtaataccttttacttctaaggttctggaa
ccatgccaaagcagcttagcgtatcaacctcccaatccttggaccatgggcattcttggg
ttacttgctgagatatattcaatgccaaacttgaaaatgaaccttaagtttgacattgag
gtcctattcaagaacctaggtgttgatatgaaggatgttgcaccaacttctcttctcaag
gatcgcaaaagggaagttgaagggaatcctgacttttctaacaaagatgctggggcatcc
cagccacagttagttgctgaaatcaaatcaggaatgatatcttcagtgaatcaagttgag
ctaccgcttgaggttgctagtgcgtctaattctggcggccactcgcatttcttatctcag
tatgctgcttctcttcatctcccttctggtacattgatggaggatgaaaagctatcagct
ttaggattggcggatcagctccccaatgctcaaggactcatgccagccactccatcccag
tcacctttctccattagtcagcttcctgcaccaatacctaacattggaacacatgttatt
atcaaccagaagctcagtgctttaggcctacacctgcatttccagagagtggttcctatt
gcaatggatagagctattaaagagatagtatctggtattgttcagcgcagtgtatctatt
gcaactcaaacaacaaaggagcttgttttaaaggattatgctatggaatcggatgagacg
cgcatatttaatgcagcacacttgatggttgcaagtctggctggaagtttagctcatgta
acatgcaaggaacccttacgcggttcaatatcaagtcaactgaggaattcacttcagggt
ctgagcactgcaagtgaacttctagaacaagctgtacaacttgttaccaacgacaacctt
gatctaggctgtgcggtcattgaacaggctgccacggataaggcgatacaaaccatcgat
ggggaaattgctcaacaacttgctttgagaaggaagcatagagagggtgttggtcccaca
tattttgaggcaaacatgtatacaccaggttctatgggtgttgtaccagaggcactccgc
cctagacctggtcacttgtctctttctcaacagcgagtgtatgaggactttgttcggctt
ccctggcaaaaccaatccagccagagttcacatgccatgccttctggtcctgcttcatct
ggcagtactggtctaactaatacatatggctcagcatctggactactaaatcttggcagc
agtgctgcctcaggaagcacaggatttgaaacactctctcggctacaggatgagtcgatg
gaatccagttcggctctgcatcttagtggttcctctattcacattggagttgcggatgga
attacccagcttagttctgaaaatgattctgccactgcttcagcctctgagttgcattcg
ttggattcctctgatgttgcaaaagaatctgggactgcttcacagccattaccttcacca
gttgccaccgagcgccttggaactagcatatcagatcctttgctcaccactggggatgca
ttggataaataccagattgttgcacagaagttggaagctttgctaaaaaatgatggtaaa
gaagcagaaattcagggagtcattgctgaagttcctgaaatcatactcagatgcataagt
cgagatgaagctgccctggctgttgcccagaaggtttttaaaggtttatacgagaatgga
tcgaataatattcatgccagtgctcatcttgcaattctgactgccattcgtgatgtttgc
aagcttgttgtgaaggaactcactagctgggttctttactcagatggggaacgtaagttc
aacaaggatgtaactgttggccttattcgccgtgaattgctaaaccttgcagagtacaat
gtttacatggcaaaacatattgatgggggaaggaataaagctgcgactgagttttcaatt
tcccttctgcaaagtttagtcatcgaagaatctagagttatttctgaactacacaatctt
gttgatgccctggcaaaggttgctgcaaagcctggatctcctgagtcattacaacagctg
attgagcttgtgaagaatcctgctactggtgtggttgctgtatctggttttaatattgga
aaggaggataagtccagacaattgaaagacaaaaaggctcctgtacaatctacagcgagc
agggaagactataataatgcagagtctctagaaccagatcccgttggttttggcgagcag
gtttctttgctgtttgcggaatggttccggatatgtgagctgcctgggtcaaatgatgca
gcctctgcaaatttcatctcacagttgcatcagaatggactactgaagggggatgatatg
acagatcgctttttccgccttctaacagagatttctgttgcgcattgtctttcttctgag
gtgataaattcagccacgttgcaatcaaccccgcaagtgcaaaatatttccttcttagct
gttgatatgtatgcaaaactcgtattttcaattctgaagggtccaagcaaactctttctt
ttttctaagattctggcagtgactgtgagattcatccagaaaaatgcagaggagaagaaa
gaatcttttaatccaagaccctattttagattgttcattaactggctgctggacctgagt
tccctggatcctgttattgatggtgcaaacgttcagattttggcagcatttgcaaatgca
tttcatgctctgcagccccttaaagttcctgcattcagctttgcgtggctcgagttggtg
agtcacaggagtttcatgccaaaaatgctcactgtaaatggtcagaagggttggccctac
atccagcgcttgctggtagacttgttccaattcatggagccatttttgaggaatgctgaa
cttggaatgccggctcattttctgtataaaggcacacttagggtactgttagtgctgctt
cacgatttccctgagttcctttgtgattaccactttaccttctgtgatgtaattcctcca
agctgcattcaaatgcgaaatattatccttagtgcatttccccgtaatatgaggctgcct
gatccatcgacaccaaatctaaagattgatttacttccggatattggtcaatccccacgg
attctctctgaggttgatgcagctcttaaagcaaagcagatgaaggctgatgtagatgag
tatctcaagactaggcaacctgggtcctttctgaccgaactgaagcagaaactcctccac
ctaccaaatgatgctgcagcagctggtacccgttacaatgttcccttgatcaactccctc
gtgctctatgttggaatgcaggccatccagcagttgcagccgaaaactcctcattctcag
tccacatccaacaccgttccattggctgtgttcttggttggtgctgccttggacatcttc
caggcactaatagcggacttagataccgaagggcgctatctgtttctcaatgcagttgcg
aaccaattgcgatatccaaatacccatacacattatttctccttcatccttctttacttg
tttgcagaatcaaaccaggaaattatccaggagcaaattacaagagtgctgttagaacgc
ctgattgttaatcgacctcatccatggggtcttctgattactttcatcgagttaattaag
aaccctagatacaacttttggaaccgaaccttcataaggtgtgctcccgagattgaaaag
cttttcgaatcagtctcaagatcctgtggaggaccaaaatccgtggatgaaagtatggtt
tctggttgggcgtccgacaacgcccactga
DBGET
integrated database retrieval system
