Carya illinoinensis (pecan): 122292324
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Entry
122292324 CDS
T08745
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1-like isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122292324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cill03400
]
122292324
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
122292324
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
122292324
NCBI-ProteinID:
XP_042956542
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All DBs
Position
1:complement(57408413..57415929)
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AA seq
1257 aa
AA seq
DB search
MVKRRHLYQSKNAFDTYPFEALFFGSWEAVEFIRIMNGTMTIHFMDNQYISQEKSVFSNL
RIRSRRANLSDCTCFLRPGIDICVLSASRQPMNSDEEKQRPVRLDARISSVERKPHEDQC
SCQFYVNFYVNQGPLGSERGTLCKEVNVVGIDRIFILQRLEGVPCEDQYYRWASSEDCSS
LPKTKLFLGKFLSELSWLLVVSVLKHIAFDVRSVQNKLVYKIFGADDDRCASDSGNYLSA
VNFRVKDDILVPNMVQFVPADAIEAGPACGMPEAGSPFYDLMELRRSKRRNVQPERFLGC
DSAPEIDVGFVRTRPYKVDQCKDDEMSLPLSSLFRMHANRSKEHNEGKPKIHARRIKPFE
DLLEYKQTTKPTEVKSSMASQTEHQTELAIIPLPEESGPIAFEHHHHLAKSNGNYEEITE
HSARYYYMNSTPKLQRKKISGLEDMEFEGRWEGKDSNREVQRKRSHSVFSKRDSFGEQRN
YQKRSLSAGAYKDLIDSFLKNMDTTVKKEEPQIIDQWKKSTDTNSLDQRREVEPPPDENE
EEVSETEMLWKEMELAMASSYLFEDNEDSNAGVSTEIMNKSNDYCQHEYKLDEEIGILCR
RCGFVSSEIRDVSAPFMQYTCWNTDEKQCNEEDSVHKLDKDEDLHLLCRQVSSDVHLSEE
NDNVWALIPELVKKLHFHQKKGFEFLWKNIAGSLEPSLMDRASKKTGGCVISHSPGAGKT
FLIISFLVSYLKLFPGKRPLVLAPKTTLYTWYKECIKWEIPVPVYLIHGRRTYRVFKQHS
QKSVSFPGVPKPTDDVMHVLDCLEKIQKWHAHPSLLVMGYTSFLTLMREDSKFAHRKFMA
KVLRESPGILVLDEGHNPRSTKSRLRKVLMKVETDQRILLSGTLFQNNFCEYFNTLCLAR
PKFVDEVLKELDPKYRRKKKGKEKARHLKEARARKFFLDQIAKKIDSNIGEERMQGLNML
RNLTNGFIDVYEGGGSDSLPGLQIYTLLMNSTDIQHEILVKLHKIMAGYPGYPLELELLI
TLGSIHPWLIKTTGCVNKFFSTRELMELEKYKFDLKKGSKVRFVLNLVYRVVKKEKILIF
CHNIAPVKLFLELFENIFGWQRGREVLVLTGDLELFERGRVMDKFEEPGGASRVLLASIT
ACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQRVVYVYQLLATGTLEEGKYRR
TTWKEWVSSMIFSEAFVEDPSRWQAEKIEDDILREMVEEDRMKSFHMIMKNEKASTS
NT seq
3774 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagagaaggcatctgtatcaatccaaaaatgcatttgatacttatccttttgaa
gcacttttctttggctcatgggaggcagtggagttcatcagaatcatgaatgggactatg
accatacatttcatggataatcagtacataagtcaagagaaaagtgtgttctcaaacctc
cgcataaggtcaaggcgggctaatttatctgactgcacctgttttttgagacccggcatt
gatatatgtgtgctttcagcatctcgacagccaatgaattcagatgaagaaaaacagagg
cctgtgcggcttgatgctagaataagttctgttgagaggaagcctcatgaagatcaatgc
tcatgccagttttatgttaacttctatgttaaccaaggcccactaggttcagagagagga
acactctgtaaagaggttaacgttgtgggaattgatcgaattttcatcctccaaaggctc
gaaggagttccttgtgaagatcagtattatcggtgggcttcctctgaggactgctcttct
ttgcccaaaactaaattgtttcttgggaaattcttatctgagctttcatggttgcttgtt
gtatcagttttgaagcatatagcatttgacgtaagatccgtgcaaaacaagcttgtctat
aaaatttttggagctgatgatgatagatgtgcatctgactctggtaattacttaagtgcc
gtaaatttcagagtaaaagatgatattttggtgccgaacatggtacaatttgttccagcg
gatgccattgaggcaggcccagcttgtggaatgcctgaagctggatcaccattttatgat
cttatggaattgcgacgctccaagcgtcgaaatgtgcaacctgagcgctttcttggctgt
gatagtgctccagagatagatgtaggctttgtccgaaccaggccatacaaggtagaccag
tgtaaagatgatgaaatgtcattgccactgtcttccctgtttcgtatgcatgcaaaccgt
tcaaaagagcataatgaaggtaaaccaaagatccatgctcgaagaataaaaccctttgag
gatctcctagagtacaaacaaacaaccaaaccaacggaggtaaaatcaagcatggctagt
caaacagagcatcaaactgaacttgctatcattcctctgccagaagaaagtggcccaata
gcctttgaacaccatcatcatcttgccaaaagtaatggaaattatgaagagatcaccgag
cattctgcccggtattattacatgaatagtacccccaaattacagagaaagaaaatttct
ggcttggaggatatggagtttgaaggtagatgggaaggaaaagattctaatcgagaagtg
caaagaaaaagatctcattctgtattttcaaaaagggatagttttggtgaacagaggaat
tatcagaagagatcgttgagtgcaggtgcatacaaggatctaatagattcattcttaaag
aacatggataccacagtcaagaaagaagagccacagatcattgaccagtggaaaaaaagt
acggacacaaacagcttggaccaaaggagggaggtggaaccacccccagatgagaatgag
gaagaggtctcagaaactgaaatgttgtggaaagaaatggaactagccatggcatcaagt
tatctttttgaagacaatgaggattcaaatgctggagtgtcaactgagatcatgaacaaa
tcaaatgactattgccaacatgaatacaagttggatgaagaaattggaattctgtgtcgt
agatgcggctttgtgagctcagagataagagatgtttcagcaccctttatgcaatacaca
tgctggaatacagatgaaaagcaatgcaatgaagaagattcagtgcataagctggataaa
gatgaggatttgcatctcctttgtcgtcaagtttcctcagatgtgcatttatcagaagaa
aatgacaatgtatgggccttaatccctgaacttgtaaagaaattacacttccaccaaaag
aagggtttcgaatttctatggaaaaatattgctgggtctttggaaccatcacttatggac
agggcatccaagaaaactggtggttgtgttatttctcattctcctggagcggggaaaacc
tttctcattatttcattccttgttagctatttgaaattgttccctggaaaacgacccttg
gttcttgctccgaagactacactatatacctggtacaaggaatgcatcaagtgggaaatt
cctgttccagtttatctaattcacggtcgtagaacctacagagtcttcaagcagcattca
cagaaatctgtgtcctttcctggagttccaaagcccactgatgatgtcatgcatgttttg
gattgcctggagaaaatacagaagtggcatgcacacccaagtcttctcgtcatgggttat
acatcatttctaacattaatgcgagaagactccaagttcgcccacagaaagtttatggct
aaagtgctacgggaaagtccagggatattggtactagatgaaggacacaaccctagaagt
acaaaatcaaggttgagaaaggttttgatgaaagttgaaacagaccagagaatattgctt
tcaggtaccttgtttcagaacaatttctgtgaatattttaacaccctatgtttggcaagg
cccaagtttgtagatgaagttttgaaggaattagacccaaagtacaggaggaaaaagaaa
gggaaggaaaaagcgcgccatttgaaagaagccagagcaagaaagttctttttagatcag
attgcaaaaaaaattgattcaaacataggagaagagaggatgcagggtctaaacatgttg
agaaatctcacaaacggatttatagatgtgtatgaaggtggaggttctgacagcctccca
ggtttacagatttacaccttattaatgaattcaactgacatacagcatgagattttggta
aaactgcacaagataatggcaggataccctggatatccactggaattagaacttttgata
acccttggctcaatacatccctggttaattaaaaccaccggctgcgttaacaagtttttt
agtacaagggaacttatggagcttgaaaaatacaagtttgatttgaagaaaggatcaaaa
gtaagatttgttttgaaccttgtgtatcgcgttgtcaagaaggagaagattctgattttt
tgccacaacattgctcctgttaaattgtttctggagttatttgagaatatctttgggtgg
cagagaggtagagaggttttggtccttacaggggatttagagttgtttgagcgaggaaga
gtgatggataaatttgaagaaccaggtggagcatcaagggtgctgcttgcttcgattaca
gcctgtgctgagggcattagtttgacagcagcttctcgggttataatgttggattcagaa
tggaacccttccaagacaaagcaggctattgcacgggcttttcggcctggtcagcaaaga
gtggtttatgtgtatcagctattggcaacaggaacactggaagaaggcaagtatcgtagg
acaacatggaaggagtgggtctcaagcatgatttttagtgaggcatttgtggaggaccct
tctcgttggcaggctgaaaagattgaagatgatattttacgggaaatggtggaggaggat
cgtatgaaatcattccatatgatcatgaagaatgaaaaggcttcaacaagttga
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