Carya illinoinensis (pecan): 122293412
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Entry
122293412 CDS
T08745
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122293412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122293412
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122293412
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122293412
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
122293412
NCBI-ProteinID:
XP_042957911
LinkDB
All DBs
Position
14:3108657..3142178
Genome browser
AA seq
2413 aa
AA seq
DB search
MLKFSSTSANQIRFLLQSLNESNKDAALRELLQFVEYGIEGSIILLQTCIDHLSFYITDS
KNMQLDSVVASIFKYLLDKPNFSTVFFESLRDTDINEGTIENFSNALHLSVSEKIGFGLA
LSDSENLDTRISGKNFSMAQIQEFCANPVSVNSSEQIQNVVMFLQRSEGLSKHVDFFMQM
LSLVKSNEVTPFVLSPLFPDELCEDYFLRNVDAFHESREDDFDSILAEMEKEMSMGDIIK
ELGYGCTANSSQCKEIFSLFLPLTEITLSKVLGTIARTQASLDDNLTTLSTFSLALGCST
LSDLPLLSSWNIDVLIDTIKQLAPGTNWIRVIENMDHEGFYFPNWEAFSFFMSVYRHACQ
EPFPLHAICGSVWKNAEGQLSFLKYAISAPPDVFTFAHSVRQLSYIDGVHGHKLQFDHAN
YSWLCLDLLDILCQLAERGHATSVRSMLEYPIKNCPEVLLLGMAQINTDYNLLQYEVSFT
IFPIILKHAMGSGMILHLWHVNPNLVLRGFVDSLNYDPDSMTRILDICQELKIISAVLDA
IPSSYAIRLAALASRKEFVDLEKWLGYNLNTYKDIFFEECLNFLKEIFGGSHDFSTKTFH
HSGAVLNLCVETSSTFVKVLKAHAGLINSSHLAEEMEKLSLTFMDSSPRLQNGGATDSST
SDGYADDIESEANSYFHQMFSGQLTIDAMVQMLAQFKESSVQREQSIFECMVANLFEEYR
FFPKYPERQLKIAAVLFGSVIKHQLVTHLTLGIALRGVLDALRKPADSKMFLFGTLALEQ
FVDRLIEWPQYCNHILQISHLRGTHSELVAFIEQALARISAGHSDTDGGSHAAVVNHHGS
NQASLGNLELNGSSIIQPGQQLLSPLQLQQRHESVEDHHHKAAAASSSDVKPILSSVGQS
SAVNLGDTSTTIQKSQHAVSAPSMLSSSSGFVRASRGVTSTRFGSALNIETLVAAAEKRD
TPIEAPASEIQDKISFIINNISAANIETKAKEFTEIFKEQYYPWFAQYMVMKRASIEPNF
HDLYMKFLDKVNSKALNKEIVQASYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIG
RNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILGLLS
EIYSMLNLKMNLKFDIEVLFKNLGVDMKDVTPTSLLKDRKREIEGNPDFSNKDVGASQPQ
LAAEMKSGMVSPMNQIERPLDVGGASNSGGHTHLLSQYAASLHLPSGTLMEDEKLSALGL
ADQLPSAQGLLQATPSQSPFSISQLPAPIPNIGTHVIINQKLSALGLHLHFQRAVPIAMD
RAIKEIVSGIVQRSVSIATQTTKELVLKDYAMELDETRIFNAAHLMVASLAGSLAHVTCK
EPLRGSISSQLRNSLQGLNIANELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEI
AQQLALRRKHREGVGSAFFDANMYTQGSMGVVPEALRLKSGHLSLSQQRVYEDFVRLPWQ
NQSSQSSHAMSSGPASTASTGLTGAYGPASGQLNLGYSSGTGDTGFEVASRTQEESMESS
SALHFSGSSIHIGVADAVTQISSENDSSTASFPPTASASELHSLESSDVAKESGDASQSL
PSPVSTERLGSSISETTLSTRDALDKYQIVAQKLEALLNNGGKETEIQGVIAEVPEIIIR
CISRDEAALAVAQKVFRGLYENGSNKIHVGAHLSILTAIRDVCKLVFKELTSWVIYADEE
RKFNKDITVGLIHSELLNLAEYNVHMAKLIDGGRNKAATDFAISLLQTLVIEESKVVSEL
HNLVDALAKVAAKPGPPESLQQLVELVKNPAAGVVAISGVNVGKEDKARQLKDKKASGYS
TASREDYNNAEIVEPDPAGFREQVSFLFGEWYRICELPGANDAASTHFILQLHQNGLLKG
DDMTDCFFHLLTEISVAHCLSSEVLNSATLQSSPQQVQNLSFLAVDIYAKLLFSILKVSS
KFFLLSKILAVTVRFIQKNADEKKESFNPRPYFRLFINWLLDLSSMDPVIDGANFQILTV
FANAFHALQPLKVPAFSFAWLELVSHRSFMPKMLTVNGQKGWPYIQRMLVDLFQFMEPFL
RNAELGVPVHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRN
MRLPDPSTPNLKIDLLAEISQSPRILSEVDAALKAKQMKADVDEYLKTRQPGSFLTDLKH
KLLLSPSDAAAAGTHHNVPLINSLVLYVGMQAIQQLQPKTPHTQSTANTVPLAVFLVGAA
LDIFQALVVDLDTEGRYLFLNAVANQLRYPNTHTHYFSFILLYLFAESNQETIQEQITRV
LLERLIVNRPHPWGLLITFIELIKNPRYNFWNRAFIRCAPEIEKLFESVSRSCGGPKSVD
ESMVSGWVSENAH
NT seq
7242 nt
NT seq
+upstream
nt +downstream
nt
atgttgaagttttcgtcgacgtccgcgaaccagattcggttcctgctccagagcctcaac
gaatccaacaaggatgctgctcttcgtgagctgcttcagtttgttgaatatggaattgag
ggcagcattattctgcttcaaacatgcattgatcacctgagcttttacatcacagactca
aagaacatgcagctggattcagttgttgcatcaatttttaaatacttgttggacaaacca
aattttagcacagtgttttttgagtcgctaagggatacagatatcaatgaaggaactatt
gagaatttctccaatgcacttcacctgtctgtatctgaaaaaattggctttggccttgct
ttgtcagattctgaaaatcttgataccaggatttctggcaaaaatttttctatggctcag
attcaggaattctgtgccaatcctgtttcggtgaattcttctgaacaaattcagaatgtt
gttatgttccttcagcgctctgagggcctttccaagcatgtagatttctttatgcagatg
ttatctctagtgaagtcgaatgaagtcaccccatttgttttaagtccattgtttccagat
gaattgtgtgaggattattttctgaggaatgtggatgcgttccatgaatctagagaagat
gattttgattctattttagcagaaatggagaaggaaatgagcatgggagatattataaag
gaactaggttatgggtgcaccgcaaattcatcacagtgcaaagagattttctctcttttc
ttgccactgactgagattactttgtctaaagttctcggcacaattgctcgaacccaagct
agtcttgatgacaatctgaccacactttcaacttttagcttggctctgggttgcagcact
ttgtctgatctgccattgttgagctcctggaatattgatgttctcatagatacaatcaag
caacttgctcctggaaccaattggatacgtgtcattgaaaatatggaccatgaggggttc
tactttcctaattgggaggcattctctttttttatgtcggtatataggcatgcgtgccag
gagccattccctctccatgccatttgtgggtctgtttggaagaatgctgagggtcagcta
tcttttcttaaatatgctatttcagctccaccagatgtatttacgtttgcccattctgtg
aggcagctgtcctatatcgatggtgtgcatggccataagcttcaatttgatcacgcgaat
tattcatggttgtgtcttgacctcttggacatactatgtcaactagctgaaaggggtcac
gccacttcagttcggtcaatgcttgaatatcctattaaaaattgtcctgaagtcttactt
cttgggatggcacaaataaatactgattataacctcctccaatatgaagtatctttcact
attttccccattatacttaaacatgccatgggtagtgggatgattcttcacctttggcat
gttaaccccaatttggtattgcggggatttgtagattctctcaactatgatccagacagc
atgactagaatattggacatttgccaagagctaaagattatatcggcagtgttagatgca
attccttcttcttatgccataagattggcagcgcttgcctcaagaaaagaattcgtagac
cttgagaagtggctcggttataatttaaatacatataaagatattttctttgaggagtgc
ctcaacttcttaaaggagatttttggcggatcacatgatttttccaccaaaacgttccat
cactctggtgctgtcttgaacctttgtgtggagactagttctacttttgttaaggttctt
aaagctcatgctggcttgattaactcaagccaccttgccgaggaaatggaaaagttgtct
ttaacatttatggattctagtccaaggttgcagaatggtggggctacagattcttcaacg
tctgatggatatgcggatgatattgagagtgaagcaaactcttacttccaccaaatgttt
tctggtcagttgaccattgatgcaatggtccaaatgcttgctcaattcaaggaatcttct
gtgcaaagggaacaatcaatttttgagtgcatggttgcaaatctgtttgaggagtacaga
tttttccccaagtatcccgaaaggcagctcaaaattgctgcagttctgtttggctctgtt
atcaagcaccagcttgtgactcatctcactctagggattgctctgcgtggtgttttagat
gcactacgcaaacctgcagattcaaaaatgttcttgtttgggactctggctttggagcag
tttgtggatcgactgattgaatggcctcaatattgcaatcatatcttacagatatcccat
ttgcgtggtactcattcagaacttgttgctttcattgaacaggctcttgccaggatttca
gccggccattcagacacagatggaggcagccatgctgctgttgttaatcaccatggctct
aaccaggcttccttgggaaatttggagttaaatggctctagcatcatacagcctgggcag
cagcttctgtccccactgcagcttcaacagagacatgaaagtgttgaggatcatcatcat
aaagccgctgcagcatcatctagtgatgtgaagccaatcttatcttctgtagggcagtct
tcagctgttaatttaggcgatacttccaccactattcaaaagtcacagcatgctgtcagt
gccccatcaatgctatcctcctcatctggctttgttcgtgcttcacgtggagttacttct
accaggtttggctctgctctgaacattgaaacacttgttgccgctgctgagaaaagagac
actcccatagaggctccagcatcagagattcaagataaaatatcttttatcatcaataat
atctcagctgctaatattgaaactaaagcaaaagaattcactgaaatttttaaagaacag
tactatccctggtttgcacaatatatggttatgaaaagagcaagcattgagccaaatttt
catgacttgtatatgaaatttctggacaaggttaattcaaaggctttgaataaagagatt
gttcaagccagttatgagaactgcaaggttcttttagggtctgagcttataaagtcaagt
tctgaagagcgttcattgcttaaaaacttaggtagttggcttgggaagttaacaattggg
agaaatcaagttttaagggctcgtgaaatagatcctaaatcgttgattatagaggcatat
gagaaaggattgatgattgcagtgataccatttacttctaagattctggaaccgtgccaa
agcagcctggcatatcaacctcccaatccttggaccatgggcattcttgggttactttcg
gagatatattcaatgctgaacttgaaaatgaaccttaagtttgacattgaggtcctattc
aagaacctaggtgttgatatgaaggatgttacaccaacctctcttctcaaggatcgaaaa
agggaaattgaagggaatcctgatttttctaacaaagatgttggagcatcccaaccacag
ttagctgctgaaatgaaatctggaatggtatctccaatgaatcaaattgagcgaccgctt
gatgttggtggtgcatctaattctggtggccacacacatttattatctcagtatgctgct
tcccttcatctcccttctggtacgttgatggaggatgaaaagctatcagcattaggactg
gctgatcagctcccctctgctcaaggattattacaagccactccatcccagtcgcctttc
tccattagtcagcttcctgcgccaataccaaacattggaacccatgttattatcaaccag
aagctcagtgctttgggcttacacttgcatttccagagggcggttccaattgcgatggat
agagctattaaagagatagtatctggtattgttcagcgcagtgtatctatagcaactcaa
acaacaaaggagcttgttttaaaggattatgcaatggaattggatgagacacgcatattt
aatgcagcacacttaatggttgcaagtctggctggaagtttagctcatgtaacatgcaag
gaacccttacgtgggtcaatatcaagtcaactgaggaattcacttcagggtctgaatatt
gcaaatgaacttttagaacaagctgtacaacttgttaccaatgacaaccttgatcttggc
tgtgcagtcattgaacaggctgccactgataaggcaatacaaaccattgacggggaaata
gctcaacaacttgctttgagaaggaagcatagagagggtgttggttccgcattttttgat
gcaaacatgtatacacaaggttcaatgggtgttgtaccagaggccctccgcctgaaatct
ggtcatttgtccctttctcaacagcgagtttatgaggactttgttcggcttccctggcaa
aaccaatctagccagagttcacatgctatgtcttcaggtcctgcttcaaccgccagtact
ggtctgactggtgcttatggcccagcatctggacaactaaatcttggctactcatctggc
acaggagacacaggatttgaagtagcctctaggacacaggaggagtcaatggaatctagt
tcggctctgcattttagtggttcctcaattcacattggagttgcagatgctgttacccag
attagttctgaaaatgattcttccaccgcttcatttcctccaactgcttcagcctctgag
ttgcattcattggagtcctctgatgttgcaaaagaatctggagatgcttcacagtcatta
ccttcaccagtcagcactgagcgccttggaagtagcatatcagaaaccacactctctact
agggatgcattggataagtaccagattgttgcacagaagttggaagctttgctaaataac
ggaggtaaagagactgaaattcagggagtcattgccgaagttcctgaaatcataatccga
tgcataagtcgagatgaagctgccttggctgttgcacaaaaggttttcagaggtttatat
gagaatgggtcaaataagattcatgttggtgctcatctttcaattctgactgctattcgt
gatgtttgcaagcttgtttttaaggagctcactagctgggttatttacgcagatgaggaa
cggaagttcaacaaagatataactgttggccttattcacagtgaattgctaaaccttgcc
gagtacaatgttcacatggcaaaactaattgatgggggcaggaataaggctgcaaccgat
tttgcaatttcccttctgcaaactttagtcattgaagaatctaaagttgtttctgaacta
cacaatcttgttgatgctttggcaaaggttgctgcaaagcctgggcctcctgagtcatta
caacagctggttgagcttgtgaagaatcctgctgctggtgtggttgctatatctggtgtt
aatgtgggaaaggaggataaagccaggcaattaaaggacaaaaaggcttctgggtactct
actgcaagcagggaagactataataatgcagaaattgtagaaccagatcctgctggtttt
cgtgagcaggtttcttttctgtttggggaatggtaccggatatgtgagctgcctggggca
aatgatgcagcctctacccatttcatcttacagttgcatcagaatggactactgaagggg
gatgatatgacggattgctttttccacctcctgacggaaatttctgttgcacattgtctt
tcttctgaggtactaaactcagccacgttgcaatcctccccccaacaagtgcagaatctt
tccttccttgcagttgatatctatgcaaaacttttattttcaatcctgaaggtatcaagc
aaattctttcttttgtctaagattctggcagtgactgttagattcatccagaaaaatgca
gacgagaagaaagaatcttttaatccaagaccctattttagattgttcattaactggctg
ctggatctgagttccatggatcctgttattgatggtgcaaactttcagattttgacagtg
tttgcaaatgcatttcatgctttgcagccccttaaagttcctgcattcagctttgcatgg
cttgagttggtgagtcacaggagtttcatgccaaaaatgcttactgtaaatggtcagaag
ggttggccttacatccagcgcatgctggtagacttattccaattcatggagccatttttg
agaaatgctgagcttggagtgccggttcattttctgtataaaggcacacttcgggtactg
ttagtgttgcttcatgattttcctgagttcctgtgtgattaccatttcaccttctgtgat
gtaattcctccgagctgcatacaaatgcgaaacattatccttagtgcatttccccgtaat
atgaggctgccggatccatctactcccaatttgaagattgatttacttgcggaaatcagt
cagtccccacgcattctttctgaggttgatgcagctcttaaagcaaagcagatgaaggct
gatgtagacgagtatctcaagactaggcaacctgggtcctttctgactgatctgaagcat
aaactcctcctctcaccaagtgatgctgctgctgctggtacccatcacaatgtgcccttg
atcaactccctcgtgctttacgttggaatgcaggccatccagcagttgcagccgaaaact
cctcatactcagtccactgccaacactgtcccattggctgtgttcttggttggtgctgcc
ttggacatcttccaggctctagtagtggatctagacaccgaaggacgctatctctttctc
aatgcagttgcgaatcaattgcgctatccaaatacccatacgcattatttctcttttatt
cttctttacttgtttgccgaatcaaaccaggaaacaatacaggagcaaataacaagagtg
ctgttagagcggttgattgttaatcgacctcatccatggggccttctgattactttcatc
gagttaattaagaatccaagatacaacttttggaatcgagccttcataagatgtgccccc
gagattgaaaagctattcgaatcagtgtcaagatcctgtgggggaccaaaatcagtggat
gagagtatggtttctggttgggtatctgaaaacgcccactga
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integrated database retrieval system
