Carya illinoinensis (pecan): 122299868
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Entry
122299868 CDS
T08745
Name
(RefSeq) UV-stimulated scaffold protein A homolog
KO
K23720
UV-stimulated scaffold protein A
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
122299868
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cill03400
]
122299868
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
122299868
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UVSSA_N
DUF2043
VHS
DUF6099
Motif
Other DBs
NCBI-GeneID:
122299868
NCBI-ProteinID:
XP_042966279
LinkDB
All DBs
Position
2:complement(8168199..8172164)
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AA seq
652 aa
AA seq
DB search
MAAMEKREDEGKVRVLIEKATNSTAPEVDPRLLKAIKSVVRYSDSELRLAARTLMALMKR
DHSQVRYLTLLIIDELFMRSKLFRTVLVENLDQLLSLSVGFRRNLPLPAPPAVASVLRSK
AIEFLEKWNTSFGVHYRQLRLGFDYLKNTLKFQFPNLQAHAARIQQERSERERRSKEILL
NKFEMLKENFSSIKEEIKLTIDEIGECLDIVCTKEEFMPPGPLDDEDFVEFRSSELLQIR
LNTLKEGGKVRENSENKVVFDALRELYKLLATKHLVSVQEWISVLVRVEVADNRFRDSVL
KELIDIRNNLISVKKKCEESGCALVTTANHDEEDEDFWEEGKIGSLENGKSAVPDKQNED
ISMASTSSELKNRTPESSNRDCNDNEMLNREDDETDSNPLKGKLMAEAPVMKWGSFLDNW
GSSREVLANQRGLELESHWGRVDYNAVIPAEKIAELNVHATLYKEEPMEIQPCRAPLRKG
GVCQRKDLRVCPFHGPIVPRDDEGKPLNQNSLKDEIILDSRIDLVEQLAKQAVKNVRERE
KEVTKKREIDKESMKRAKLAKIREHNAAVLRDAALASTSRSEAIGQDMEVTNSETSSARN
KKETLSSMLRKKVTSKDRLAERLLNTRVKDATVRELTSGEDANYREAFPNQW
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaatggagaagagagaagacgaagggaaggttagggttttgatagagaaggcg
acgaactccacggctccggaggttgacccccgactcctcaaggctatcaaatcggtcgtt
cgatattcggattccgagctccgactcgctgcccgtacccttatggccctcatgaagcgc
gatcactctcaggtaaggtacctcacgcttctcataattgatgaactcttcatgcggtcg
aagcttttcagaaccgtccttgttgagaatttggatcagttactgagtttgagtgttggg
ttcagaagaaatctgcctcttcctgctccaccagccgtggcatctgttttgcggtcgaag
gcaatcgaattcttggagaagtggaacacttcctttggggttcattacaggcagctcaga
ttaggatttgactaccttaaaaacaccctcaagtttcaatttcctaatctacaggcacat
gcagcacggattcagcaggagagaagtgaaagggaaaggaggtcaaaagagatcttacta
aacaaatttgaaatgttgaaggagaatttctcatcaataaaggaagaaataaagttaacg
atagatgagattggggagtgtttagacattgtctgtacaaaagaggaattcatgccacca
ggtcctttggacgatgaagattttgtggagtttcgttcatctgaactgctgcaaatacgt
ctcaatactttaaaagaagggggaaaggttcgtgaaaacagtgaaaataaagtggttttt
gatgcattaagggagctatacaagcttttagcgacaaagcatttggtttcagtccaagaa
tggatttccgttcttgtaagggttgaagtagcagacaacaggttcagagattctgttttg
aaggagttaatcgacatccgaaataatctcatatcggtgaagaagaagtgtgaagagtca
ggttgtgctcttgtgacgactgcaaatcatgatgaagaagatgaagatttctgggaggag
ggtaagattggatcacttgagaatgggaagtctgctgtgcctgataagcaaaatgaagat
atttccatggcgtcaacatctagtgagttgaaaaatagaactcctgaaagcagtaacaga
gattgtaatgacaatgaaatgctcaatcgtgaagatgacgaaaccgattcaaaccctttg
aagggtaagcttatggctgaagctccagtgatgaagtggggctctttcttggataactgg
ggttcaagcagggaggttttggctaaccagcggggattggagcttgagagtcactggggg
agggtggactataatgcagttattccagctgagaaaattgcagaattaaatgttcatgca
actctttacaaagaggagccgatggaaattcaaccatgccgtgctcctttgaggaaaggg
ggagtttgtcagagaaaagatttgagagtttgcccgtttcatggacctattgtaccccga
gatgatgagggaaaaccactcaatcagaactctttaaaagatgagataattcttgattca
aggattgatttagttgagcagttagcaaaacaagctgtgaagaatgttcgtgagagagag
aaagaggtaacaaagaagagagaaattgataaagagtcaatgaagcgcgcaaagcttgcc
aaaatcagggagcacaacgcagctgttctaagggatgctgcattggcatcaacgtcaaga
tctgaagctattggacaagatatggaggtgactaacagtgagacatcctcagccagaaac
aaaaaggaaacactgtcgtccatgctgcgtaagaaagttacatcgaaagataggttagct
gagaggcttttgaatacgagagtgaaggatgcaacagtaagagagcttacatcaggtgaa
gatgcaaattaccgagaagcctttccaaatcaatggtaa
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