KEGG   Carya illinoinensis (pecan): 122309579
Entry
122309579         CDS       T08745                                 
Name
(RefSeq) splicing factor SF3a60 homolog
  KO
K12827  splicing factor 3A subunit 3
Organism
cill  Carya illinoinensis (pecan)
Pathway
cill03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cill00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    122309579
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cill03041]
    122309579
Spliceosome [BR:cill03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    122309579
 Complex B
    122309579
 Complex C
   U2 SnRNP specific factors
    122309579
SSDB
Motif
Pfam: SF3a60_Prp9_C SDE2_2C SF3A3 SF3a60_bindingd Desulfoferrod_N
Other DBs
NCBI-GeneID: 122309579
NCBI-ProteinID: XP_042979034
LinkDB
Position
5:complement(46961425..46971131)
AA seq 510 aa
MSSTLLEVTRAAHEDVERLERLIVKDLQNEPATSKDRLFQSHRVRNMIDTIISTTEKLVE
IYDDNDNARKDEIAALGGQTATGTNVFSAFYDRLKEIREYHRRHPAARVVDATEEYEALL
KEEPIIEFSGEEALGRYLDLHELFNLYINSKFGEPSTEYSAYLDIFSQPHKIPRKLKLTR
QYREYTENLLEYLVYFFQRTEPLQDLDRIFLKVEAEFEEQWANGNIQGWENEGQENGHVP
AMHTVIDLDYYSTVEELTEFGPEKLKEALAALGLKTGGTVQQRAERLFLTKHTPLEKLDK
KHFAKGARASQQNQAAAVPEQDDNVKEIALLETKLKKLCDLLDETIARTKDNVVKKQALT
YEEIEAEREEEETQADTESDDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEIC
GNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKKIQERQGVNKW
RPDLEEEYEDREGNIYNKKTYADLQRQGLI
NT seq 1533 nt   +upstreamnt  +downstreamnt
atgtcatcgacgttgctggaggtgacgagggcagcacatgaggacgtggagcggttggag
aggctgatagtgaaggacctccagaatgagccggctactagcaaggaccgcctctttcag
agccaccgcgtccgcaacatgattgacactatcatttccaccaccgaaaaactcgtagag
atttatgatgataacgataatgccaggaaggatgagattgcggctcttggaggccaaact
gcaactggaacaaatgtgtttagtgcgttttatgatagattgaaagagattcgtgaatac
catagaaggcatccagctgctcgtgttgttgatgctactgaggagtacgaggcactactt
aaagaagaacctatcatcgagtttagtggagaggaagctcttgggcggtacctagacttg
catgaattgtttaacctgtacattaattctaaatttggggagccttctaccgagtactct
gcttaccttgatattttttcacaaccgcataagattcctcgcaaactaaagttgacaagg
caatacagggaatatacggagaatctattggaataccttgtatatttttttcagcggaca
gagcccttgcaagatcttgatagaatattcttgaaggttgaggctgaatttgaagagcaa
tgggcgaatggaaatatacaaggatgggagaatgagggtcaagaaaatggacatgttcct
gctatgcatactgttattgaccttgattattacagtacagttgaagagctgacggaattc
ggtccggaaaagttaaaagaggcattggctgcattaggacttaagactggcggtactgtt
cagcagcgtgctgaaaggcttttccttacaaagcatacacctcttgagaagttggacaag
aagcattttgccaaaggtgcacgtgcatcacaacaaaaccaggctgctgcagttccagaa
caagatgacaatgtaaaagaaatagccctattggagaccaaattgaaaaaactctgtgac
ttattggacgagacaattgcacgaacaaaagacaatgtcgtgaagaagcaggctttgaca
tatgaggaaattgaagcagaacgtgaggaggaagaaacacaagctgatactgaaagtgat
gatgatgagcagcagatttataatcccctcaagttgccaatgggttgggatgggaagcca
ataccgtattggctgtataagcttcacggtcttggtcaggaattcaagtgtgagatatgt
gggaactacagttactggggccgtagggcttttgaacggcatttcaaggaatggcgccat
caacatgggatgcgctgccttggtattccaaacaccaagaacttcaatgagatcacatca
attgaggaagcaaaagatctgtggaagaagatacaagaacggcaaggagtgaacaagtgg
cgcccagatcttgaagaagaatatgaagacagagagggcaatatctacaataagaagaca
tatgctgatctgcagcggcagggattgatttga

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