Carya illinoinensis (pecan): 122316503
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Entry
122316503 CDS
T08745
Name
(RefSeq) crooked neck-like protein 1
KO
K12869
crooked neck
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122316503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cill03041
]
122316503
03036 Chromosome and associated proteins [BR:
cill03036
]
122316503
Spliceosome [BR:
cill03041
]
Complex B
Other components
Prp19-related factors
122316503
Complex C
122316503
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
122316503
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_Syf1_CNRKL1_C
TPR_14
HAT
Suf
TPR_19
TPR_16
TPR_CcmH_CycH
TPR_2
HAT_Syf1_M
TPR_17
TPR_8
Wzy_C_2
Mad3_BUB1_I
DUF2659
U3_assoc_6
Motif
Other DBs
NCBI-GeneID:
122316503
NCBI-ProteinID:
XP_042989009
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All DBs
Position
7:complement(6570403..6580823)
Genome browser
AA seq
704 aa
AA seq
DB search
MSAKDADPSLGYLTRKDTEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPKQ
KITDAAELADYRLRKRKEFEDLIRRVRWNISVWIKYAQWEESQKDFNRARSVWERALEVD
YRNHTLWLKYAEVEMKNKFINHARNVWDRAVALLPRVDQLWYKYIHMEEMLGNVAGARQV
FERWMNWMPDQQGWLSYIKFELRYNEVERARQIFERFVQCHPKVTGWIRYAKFEMKNGEV
ARSRNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLY
RKFVAFEKQYGDREGIEDAIVGKRRFQYEEEVRKNPLNYDSWFDYIRLEESVGNKERIRE
VYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTREVYRECLKLIPHEKFSF
AKIWLLAAQFEIRQLNLKAARQVLGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKIYEKY
LEWSPENCYAWSKYAELERSLSETERARAIFELAIAQPALDMPELLWKTYIDFEISEGEF
ERTRELYERLLDRTKHLKVWISYAKFEASAMEEDAGDSDLAEGSSQENLYEQKKQCIQHA
RRVFEKAINYFRTSAPELKEERAMLLEEWLTMERSFGELGDVGLVQAKLPKKLKKRRPIV
AEDGPAGYEEYIDYLFPEENQTTNLKILEAAYKWKKQKLSSDDD
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgaaagatgccgatcccagtcttggctacctaacgcgaaaggatacggaggtt
aagctcccgcggccgactcgagtcaagaacaaaacaccggctcctatccaaatcaccgcc
gagcagatcctccgggaggccagggagcgccaagaagccgagatccgaccgccgaagcag
aaaattaccgatgccgccgaacttgcggactaccgcctccgcaagcgcaaagagttcgag
gacctcatccgccgggtccgatggaacatcagcgtctggatcaagtacgcgcagtgggag
gagtcgcagaaggacttcaatcgcgcacgttccgtatgggaacgcgctctcgaggtcgat
taccggaaccacacgctgtggctcaagtacgccgaggtagagatgaagaacaagttcatc
aaccacgcccgcaacgtatgggaccgtgcggtggcgcttttgccaagagtggaccagttg
tggtacaagtacattcacatggaagagatgctcggcaatgtcgctggcgcgaggcaggtc
tttgagagatggatgaattggatgccggaccagcagggctggctctcgtacatcaagttc
gagctacgctacaacgaggtcgagcgcgctaggcagatttttgagcggtttgttcagtgc
caccccaaggtcactgggtggattcggtacgccaagtttgagatgaagaacggcgaggtt
gctaggtcgaggaacgtgtacgagagggcggtagagaagcttgctgacgatgaggaggct
gagcagttgttcgttgcatttgccgagttcgaggagcggtgtaaggagacagagcgtgcg
aggtgtatctacaagtttgcgctcgaccatataccgaaagggcgagctgaggacttgtat
agaaagtttgtggcgtttgaaaagcagtatggggatagagaggggattgaggatgcgata
gtagggaaacggaggtttcaatatgaggaagaggtgaggaagaatccgctgaattacgac
tcttggtttgattacattcggttggaagagagcgtgggaaataaggaaaggatcagggag
gtttatgaaagggctattgcaaacgttcctcccgccgaggagaagcgatactggcagcgg
tacatttatttgtggattaattatgccctgtacgaagagcttgatgccggagacatggaa
cgaacgagagaagtgtatcgtgaatgtcttaagttgattcctcatgagaaattttcattt
gcaaaaatatggcttctagctgcccagtttgagatccggcagctgaatctcaaggctgca
cgacaagtcctaggaaatgcaattgggaaagctcctaaagataagatattcaagaagtat
attgagatagagctgcagcttggaaatatagatcgttgccgtaaaatctatgagaagtat
ttagagtggtcaccagaaaactgttatgcatggagcaagtacgcggagttggagagatct
ttgtctgagactgagcgagctagggctatttttgagcttgcaattgcccaaccagcactg
gatatgccagagctattgtggaagacatatatcgattttgaaatatctgagggtgagttc
gaaaggaccagagagctctatgagagacttctagacagaacaaagcacctaaaggtgtgg
ataagctatgcaaaatttgaggcatctgctatggaggaggatgctggggactcggatttg
gcagaaggtagcagccaagaaaatctttatgaacaaaagaaacaatgcattcagcatgct
agaagggtttttgagaaggcaatcaactactttagaacatctgcacctgagctaaaagaa
gagagagcaatgctgttagaggagtggttgaccatggagagaagttttggtgagctcggt
gatgttggtttagtccaggctaagctgccaaagaagctcaaaaagaggaggcctattgta
gccgaggacggtcctgctgggtatgaggagtacattgactatctttttcccgaagaaaat
cagaccacgaatcttaagatactggaagctgcctataagtggaagaagcagaagctctcc
tctgacgatgactag
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