Carya illinoinensis (pecan): 122318063
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Entry
122318063 CDS
T08745
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122318063
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122318063
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
122318063
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_11
TPR_1
TPR_2
TPR_14
TPR_16
TPR_8
TPR_17
TPR_19
TPR_CcmH_CycH
TPR_9
TPR_12
TPR_7
ARM_TT21_C
TPR-S
TPR_6
BTAD
NatA_aux_su
Motif
Other DBs
NCBI-GeneID:
122318063
NCBI-ProteinID:
XP_042991127
LinkDB
All DBs
Position
8:9411973..9430067
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AA seq
1182 aa
AA seq
DB search
MGESEEESEEAVLRRLEESVNASPDDPSLHFELGLLLWEKGGESEKEKAAEHFVISAKLN
PQNAAAFRFLGHYYAQFSVDAKRALKCYQRAVSLNPDDSHSGESLCDLLDNEGKESLEVS
VCRDASEKSPKAFWAFRRLGYVQLHQNKWSEAVQCLQHAIRGYPTCADLWQALGLAYQRL
GRFTAAIKSYGRAIELDSTNMFALVESGNIFLTLSSFKKGVEQFRQALEISPQSVSAQYG
LASGLLGLAKECVNLGAFRWGASLLEEASTVAIASTHLAGNISCIWKLHGDIQLAYAKCF
PWTEESQGLELDAETFNTSILSWKRTCCLATGAAKCSYQRALHLAPWQANIYSDIAITAD
LIYSLDKCSGNNLTAWKLSEKMALGALLLEGDNCEFWVALGCLSGHNALKQHALIRGLQL
DVSLAMGWAYLGKFYRKEGANQLAKQAFDCARSIDPSLSLPWAGMAADFHARGLAPDEAF
EGCLRAVQTIPLAQFQIGLAKLALLSGHLSSSQVFGAIKQAVQHAPHFPESHNLHGLVCE
ARFDYQSAVAAYRLARCAISSVSAIVPKSHTRDISLNLARSLCKAGNAQDALQECENLKK
EGMLDTEGLQIYAFSLWQLGKCDLALSVVRSLAVSISTMKQTSVAAPVGFICRMLYFMSG
VDSVISNILEMPKELFQNSGISFIVSAINALDQINRLESVVSSSRSVLSSHEEITGMHFL
IALGKLIRHGTEFCLGFQSGVAHLKKCLHKFPNSILLRNLLGYLLLSSTDWNDTHLATRC
CNVDAPDLDFDLPNQGLKSASEILGAGAVACYAIGNKNPKFSFPTCTYHCMNEPGAIQQL
QKCFHREPWNPNFRYLLILNLLQKAREERFPHHLCVILERLIYVALSSGLYSTTDMSYRN
YQLLLCASEISLQIGNKISCINHAKTASVLLLPDAYLFFSHLQLCRAYAAEGDIRNLQKE
YTRCLELKTDYQIGWICLKFMEARYDMQTDSNILELSFRDSSKERNYSWNMWMAIFNMVW
GLISIWNQDFLSAEEFFDQACSLAGTESCFVFCHGATCMELARRLCGSQFLSLAIKSLTK
AQEASLVPLPIVSLLLAQAEGSLGSKEKWERNLRLEWFSWPPEMRPAELFFQMHLLARQS
KSAPNSTSNVEFCQSPERWVLRAIHTNPSCVRYWKILQKLIV
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgggagaatcggaagaagaaagcgaagaagctgttctgagacggttggaggagtcggtg
aatgcgtctcccgatgacccctctcttcattttgaacttggactcttgttgtgggagaaa
gggggagaatccgagaaggagaaggcggcggagcacttcgtgatatcggccaaactaaac
cctcaaaacgctgcggctttcagatttcttggccattactacgcccaattctccgttgat
gccaagcgggctctcaagtgttatcagagagctgtctctctaaaccccgatgattcacat
tccggagagtctttgtgtgatttattggacaatgaaggaaaggagagtttggaggtgtct
gtgtgcagagacgcttcagaaaagtcgcctaaggctttttgggcatttcggagactgggt
tacgtgcagcttcatcaaaacaaatggtctgaagctgtacagtgccttcaacatgccatt
cggggttatcctacctgtgctgatttatggcaagctctgggtcttgcctaccagcgcttg
ggcaggtttaccgctgctattaagtcttatgggcgagccattgaattggacagtacaaat
atgtttgcattggttgaaagtggaaacatatttttgactctcagttcctttaaaaaggga
gttgagcagtttcggcaagctctagagatttcacctcagagtgtgtctgcacaatatggg
cttgcatctgggctacttggtttggcaaaggaatgtgttaatttgggggcattcagatgg
ggagcttcgttattagaggaggcatctactgttgcaatagcaagtactcatttggctgga
aatatatcatgtatttggaagttgcatggtgatattcagcttgcatatgccaagtgtttt
ccctggacagaggaaagccagggtttagaacttgatgcggaaacctttaacacttccatc
ctttcctggaagcggacttgctgtttagctaccggagctgcaaaatgttcttatcagcgg
gctctgcacctggccccatggcaagctaacatttattctgatattgcaataactgcagat
ctgatatattctttggataagtgttctgggaacaacttaactgcttggaaactgtcggag
aagatggctttgggggccttgttacttgagggtgacaattgtgagttttgggtggccttg
ggatgtctttctggccataatgcattgaaacaacatgccttaatcaggggattgcaattg
gatgtttctctagctatgggttgggcatacttggggaagttttatcggaaagagggtgca
aaccaattggcaaaacaagcatttgattgtgctagaagtatagatccttcgctttcatta
ccatgggcaggcatggccgctgattttcatgctaggggtcttgcaccagatgaggctttt
gagggttgcttaagagctgtgcagacaattcctcttgcacagttccaaattggtcttgca
aagcttgctctgttgtcaggacatctctcatcttcacaggtttttggagctatcaagcag
gctgtgcagcatgcacctcactttcctgaatcacataatttacatgggctggtttgtgag
gcacgatttgattatcaatctgctgttgctgcttatcgattggcacgctgtgcaatcagc
agtgtttcagctattgtcccaaagtctcataccagagatatatcacttaatttggcaaga
tctctttgtaaggcagggaatgctcaagatgctttgcaggaatgtgagaatttgaagaaa
gaaggtatgcttgacacggagggtttgcaaatatatgctttctctttatggcaacttggc
aaatgtgacttggccctttccgtggtgagaagtctggcagtgagtatttctaccatgaaa
cagacatctgtggccgcccctgttggtttcatatgtagaatgctatatttcatgtctgga
gtggattcagtaatcagtaatatcctggaaatgccaaaggaactctttcagaattcagga
attagttttatagtgtctgctattaatgctcttgatcaaattaatcggctagagtcagtt
gtctcaagcagccgatcagttcttagttctcatgaagagatcactggaatgcactttttg
atagcacttggtaaactcatcagacatgggacagagttctgtcttggatttcagagcgga
gttgctcatcttaaaaaatgtcttcacaagttccctaacagtattttgttgaggaaccta
cttggttatcttctgctctctagtacggattggaatgatactcatcttgcaactaggtgc
tgcaatgtagatgccccagaccttgattttgaccttccaaatcaaggtttaaaatcagcg
agtgaaatccttggtgccggagcagttgcttgttatgcgataggcaataagaacccaaag
ttttcttttccaacatgtacataccactgcatgaatgaacctggagctattcaacagctg
caaaaatgcttccatcgtgaaccctggaatcctaattttcggtacttgcttatactcaat
cttctacaaaaggcacgcgaagagagatttcctcatcatctctgtgttatccttgagcgg
ctaatatatgtggcactttccagtggattgtactcaacgacagacatgtcttatagaaac
taccagcttttactctgtgcttctgagatcagcctgcaaattgggaataaaattagctgc
atcaaccatgccaaaactgcttcagtacttttgcttcctgatgcttatctattcttttca
cacttacaattgtgccgtgcctacgctgctgaaggtgatattagaaatcttcagaaagag
tatacaagatgcttggaactcaagacagattatcagattggttggatatgtctgaaattt
atggaagcacgatatgatatgcaaactgattcaaacattttagaactgagcttcagagat
tcctcaaaagagaggaattattcatggaatatgtggatggccatatttaatatggtgtgg
ggtctgatttctatatggaaccaggatttcctttctgcagaagagttttttgaccaagct
tgttctttggctggtactgagagctgctttgttttctgtcatggtgctacctgcatggag
cttgccaggcggttgtgtggttcacagttcctatcacttgctattaagagtctcaccaaa
gctcaagaagcctctctcgttcctctgccaattgtctcactattgctggctcaggcagag
ggaagccttggttctaaagaaaagtgggagagaaacctccgtcttgagtggttttcttgg
ccaccagaaatgaggcccgcagaactcttctttcaaatgcatctgctcgcaagacaatcg
aaatcagcaccaaactctacatccaacgttgagttctgtcagagtccagagagatgggta
ctccgagcaattcataccaacccgtcttgtgtcagatattggaagattttgcagaaactt
atagtatga
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