Coccidioides immitis: CIMG_03576
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Entry
CIMG_03576 CDS
T01114
Name
(RefSeq) Ccr4-Not transcription complex subunit
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cim
Coccidioides immitis
Pathway
cim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CIMG_03576
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cim03019
]
CIMG_03576
Messenger RNA biogenesis [BR:
cim03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CIMG_03576
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
CIMG_03576
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
CNOT1_TTP_bind
CNOT1_HEAT
ARM_Cnot1
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
4562491
NCBI-ProteinID:
XP_001244135
UniProt:
J3KBN8
LinkDB
All DBs
AA seq
2337 aa
AA seq
DB search
MTFPSPSHSAKSSIASGTDKPSASRPVRSQQSPWGTAASQNPIRRGLTPLATNISSSTSG
SPSRRPPQSHSPAPSASATSPLTSSFSAVLSSTSRFAVGRNNPSPASTPASFAALQAGAQ
QQHQQQSGQSLTSPKFRALTPSSASHLATSATSSTGGGGSGGGGGGGGGSGVSRGATFSP
RLTGVNSPTGFASDKPNSASAASAVGSSQSSLSKISVAQVFLLLDSINEKEGKEKWETKA
AQIHKLVGSNGMEVFSKYFRRLLSGNAPQIFPGTNKVVENAGNYPLLVQEMQKVSQDMDQ
ARKIAETIDTSEGDIFRDFDLSTFVDHFKLDPISKVALILAFKSVSRADLRTKADAILST
SVPQFFQSLSAVSDSNKDFSSSFIGLTIERFIFNPPRNLNDDLKRKLIYAARMRYQVSDA
DVPAEIEAALQMFAFSDPRLTLLRQIQGRGPRSFASKDAVLDAITASGPDAYNEEQIANA
ILFMIYSQNWQQSSPELLVATVQQNQATHPISWRRIVQFFDKEGLRINARQFIRLFNALL
PVAHDDPHFDIQCLWGGEWENKDVQFSFVTAFLSSNIDTSNIPSFRSTFSIDIFDDASEM
VRQQAESIQNNPLRSLDAVKAIFDLILLTPGTWALPESQAFVKTILQHDLPTFLCSAFAI
PQPWTNVQINFVIRSFMIFVSKRQEGYQFALHGVWKLGRQWVGDQLFHAFTQDPSCTDLI
YEHAVEHGWLDYLLGFTTGLAMDLASLAHRKDSFDLEQWVKSAAQKTPVDMGGLLSKFLR
IKAEDELRVRHKEQAAPQMVSLAVKTVYALLLILEDYITDHENLTPIQRICLQAYPRLIN
YGEGLDDIIEANGTNGNAIPDEVEKQMQDLFGKMYHEELSLREILELMRRYKSSRDPGEQ
DLFTCMVHGLIDEYHCYHEYPLEALSKTAVMFGGIINFKLISGIPLKVGLGMILDAVRDH
ESHESMYKFGVEAIEQLVSRLPEWPGFCGLLLQVPSLQGTAIYRKAEDVLRAQGHRLNDT
DRDVNGLADGLALANGTVDDLVGADSTHRNFRSLHVDPPLRPDIYREPEEDVHDKILFIL
NNVSEQNIHAKLKDLQDVLRDQHHQWFASYIVEQRAKVQPNFQQLYLELLGLIDDKTLWA
EVLRETYVSAIRLLNAESTLNSSTDRAHLKNLGGWLGSLTIATDKPIKHKNIYFKDLLIE
AFDTQRLTVVIPFTCKVLGQAMKSTIFKPPNPWLMDIIALLMEIYHFAEIKMILKFEIEV
LCGDLQLDHKTIEPSTCIRERPPQLEDGLVATSIAEGLEGFDEMSLAGLNRASRNERISP
AAIISSLPNLDQILVYPPSANAVIDPNVLRQIVHTAVERAIAEIIAPVVERSITIASIST
AQLILKDFAMEPDEEKVRQAAGAMVRALAGSLAVVTCKEPLKINMTNYIRMIQQEYSEQP
MPEGLILMCVNDNLDAACGIVEKAAEERSLPEIEKVIESQLEARRRHRIARSNEPYIDPS
ISRWGFFIPEPYRQVPGGLNKEQLAIYEEFARQSRGQNHIQNTSTDSIKQLPDVLQEGFP
AIPNLSTPAEQPALPHQMTQAQQDAGVQQQTIANAQPQLNGFLQSANPREKVEKLVGDLQ
QAARDAPEDHIKDLWRDSPILQEYNQILRAILSSPNGEELARLTATKICSTLYTQTEKPL
EIEVLVHLLSKICELSSLVARYTWAVLAEVEDGQMFNVPVTVALIDAGLIDLHRVDLILA
KLIKEKNVAALELLAALMARVLFNDEPSALRSDFSGSLAAMNQWLIEDPNLNVAKDIIQK
LHETGIPESVNAFLTDQARSTRDQMEYIFSEWIGVYKFAGANDKMYSTFLKDMHQRQVMN
NQEDSALFFRLSIDISVAMFEHEYQNLGGNLDEAFLYIDALAKLVVLLVKFQGDGDGAVK
KSKPSYLNSILSLLVLVLNHHQVMRGDNFNQRVFFRLFSGILCEYAMSGLQQREEHKEMM
RVFSDKFLSLQPKHCPGFVYGWLSLISHRVFMAGMLTMEDQSGWEPFCEIVQVMLSYTGE
QLKPGNISFVAKDLYKGVLRILLILHHDFPEFVAENHFRFCTVMPAHCSQLRNLVLSAYP
SSFQKLPDPFRDGLKVDRLDEIHQAPRIAGDIVAPLQAANIKNAVDNALRSFSATDSAVQ
QICDAVDNPSEKSTGLYFAPINVDIVLLEALVLYTGQSAVSATGQKAGTPAPNNLPQSAL
LEKLVKVLNPEGRYYFLSSIANQLRYPNSHTHYFSNVMLELFGSYPADQQGTDIREQIIR
VLLERLIVHRPHPWGLIITLQELLQNSSYPFFRLPFIQAAPEVSKKIITECYSMVLT
NT seq
7014 nt
NT seq
+upstream
nt +downstream
nt
atgaccttcccttctccttctcattccgccaaatcctcgattgcttctggcaccgacaaa
ccctctgcttcccgacctgtaaggtctcagcagtcaccttggggtactgctgcgtctcaa
aacccaatccgtcgtggcctcacgccgcttgcgaccaacatctcatcttccaccagcgga
tctccgtcccgccgtcctccccagtcacatagccctgccccaagtgcctctgccacatcc
ccgctgacatcctccttctctgctgttctcagctccacgagtcgctttgccgtgggccgg
aacaacccgtctcccgcgtccactcccgcgtctttcgccgcgcttcaagctggcgcccag
caacagcatcagcaacaatccggtcaatcactcacatctccaaaatttcgagctcttacc
ccttcctctgcatcgcatctggccacctcggcgacttcatcaaccggaggaggcggtagc
ggcgggggaggcggcggtggaggtggttcaggtgtgtcaaggggtgccacgttctctcca
cgtctaactggcgtcaattcgccgactggatttgcttccgataaaccaaattcagcgagt
gcagctagcgctgtgggttccagtcagtcatctctctccaaaatttctgtagcccaggtg
ttcctccttttggattctatcaacgaaaaagaggggaaagaaaagtgggaaactaaagct
gctcaaattcacaaacttgttggctcgaacggaatggaagtgttctcaaagtatttccgt
cgccttctatctggcaacgcacctcaaatctttccaggcaccaataaggtggtcgaaaat
gctggaaattacccattgttggttcaagagatgcaaaaggtttcccaggacatggaccaa
gctaggaagattgccgaaacaattgacacttcagaaggcgacatatttcgtgattttgat
ctatcaacctttgtggatcattttaaactagatccaatttctaaggttgcactaatattg
gcattcaagagtgtaagcagagcagacctccgaacaaaagctgatgcgatcctctctacc
tctgtaccccaatttttccaaagtctctcggcagtttccgactcgaataaggattttagt
tcatcctttattggcctgactatcgaacgcttcatatttaatcctcctcgaaacctgaac
gacgacctaaaacggaaacttatatacgctgctagaatgcgatatcaagtttctgacgca
gatgtgccagccgagattgaagcagcacttcagatgttcgccttctcagatcctcgatta
acactccttcgacaaattcaaggccgcggaccaagatcctttgcaagtaaggatgcagtc
ctcgacgctattactgcttcaggaccagatgcctacaatgaagaacaaattgcgaatgcc
atccttttcatgatctattctcaaaactggcagcaatcctcccccgaattgctggttgcc
accgtccagcaaaaccaggcgactcatccaattagctggcgaaggatcgtccaatttttc
gacaaggaaggtctgagaatcaatgcacgacagtttattcgcttattcaacgccttgttg
ccggtggcacatgatgaccctcactttgatatccaatgtctttggggtggagaatgggag
aataaggatgttcaattctctttcgtcaccgcattcctctcttccaatatcgatacttcc
aacattccaagttttcgctcaacattctccattgacattttcgatgatgcatctgaaatg
gttcgccagcaggcagaatcaattcagaacaatcctcttcgatctcttgatgctgtgaaa
gctatttttgatctcatacttctcactcccggaacgtgggccttgccagagagccaggcc
tttgtgaaaacaatcctgcaacatgatctgccgaccttcctctgctccgcatttgccatt
ccacaaccatggacaaatgtacaaatcaatttcgtcattcggtcgttcatgatatttgtg
tctaaacgtcaagaaggctatcagtttgctctccatggtgtgtggaaattgggtcgccaa
tgggttggggaccaactattccatgcatttacccaggatccctcatgtacagatttgatt
tatgagcacgcagttgaacacggctggttggactatctcttgggatttacaaccggcttg
gctatggatttggcatctttagcacaccggaaagattccttcgatttggaacaatgggtt
aaaagtgcagcacaaaaaactcctgtggatatgggcggtttgttatcaaagttcttaaga
attaaggctgaagatgagcttcgagttcggcacaaagagcaggctgctccacaaatggtt
agcctggctgtcaaaacagtttacgcgctccttttgatattagaagactatattaccgac
cacgaaaatcttactccgattcagcgtatctgcctacaagcctatcctcggctgattaac
tacggtgaaggccttgatgatataatcgaagccaacggcaccaacggcaatgcgattcca
gacgaggttgaaaagcaaatgcaagaccttttcggaaagatgtaccatgaagagctctct
cttcgagagatcctggagctaatgagacgctataaatcttcccgtgaccctggggaacaa
gacctcttcacttgtatggttcatggcttaatcgatgagtatcattgctatcatgagtac
ccactggaggcgctatcgaagacggctgttatgtttgggggcattatcaacttcaagttg
atatctggaatcccactgaaagttggtcttggaatgatacttgacgccgttagagatcat
gaatcccacgaatctatgtataaatttggcgtggaggcaattgagcagcttgtctcccgc
cttcctgagtggcctggtttctgtgggctcctcctccaggtcccaagcctccaaggaacc
gcaatctatcgaaaagccgaagacgtgctccgtgcacagggtcatcgtctcaatgatacc
gacagagacgtcaacggtttagcggatggattggcacttgccaatggtaccgttgatgat
cttgttggtgccgacagcacgcatcgaaacttccgctccctccatgttgatcctccacta
cgtccggatatctatcgcgaaccagaagaagacgttcatgacaagatcctttttatccta
aacaacgtttcagagcagaatatacatgccaagttgaaggacttgcaggacgtgcttcga
gaccaacaccaccaatggttcgcatcgtacattgttgagcagcgagcgaaggtgcagccc
aatttccaacaactttatcttgaattactaggtctaattgacgacaaaactctttgggct
gaggtattgagagagacgtatgttagcgcaattcgactgctgaatgcagaatctactttg
aactctagcactgatcgtgctcatctgaaaaacctcggcggctggcttggatcattaact
atagcaacggacaagccgatcaagcataaaaacatctatttcaaagatctactcattgag
gccttcgatactcaacggcttaccgtcgtcattccgtttacttgcaaagttttggggcaa
gcaatgaaatcgaccatttttaagccaccaaatccgtggttgatggatatcattgcactg
ctaatggaaatatatcactttgcggagatcaaaatgatcctcaaatttgagattgaggtg
ctctgcggagatttacagcttgatcataagactatcgaaccatccacttgcattagggag
cgtccgccacaattggaggatggcttggttgccacaagcattgcagaaggtctggagggt
ttcgatgagatgtctctggccggcctgaatcgggcaagtcgcaatgagagaatatcgcca
gctgcaataatttccagcctgcctaacctcgatcaaatacttgtttatccaccatcggcc
aatgcggttattgaccctaatgttctccgtcagatcgttcacactgctgttgaacgcgca
attgcagagatcatagctcctgtggtagaacgctccatcacaattgcttcgatttcgact
gctcagctgatcctgaaagatttcgccatggagcctgatgaggagaaggttcgccaagcc
gctggtgccatggttcgtgcgttggctggcagtcttgccgtggtgacgtgcaaggagcct
ctgaaaattaacatgacaaactatatacgtatgattcagcaagagtattccgagcagcct
atgcccgaagggctgattcttatgtgtgtcaatgataatctggatgcagcctgcggtatt
gtcgaaaaagctgcagaagaacgctctcttcccgaaatcgagaaggtcatcgaatcacag
ttggaagcccgtcgtcgacacagaatcgcccgttcaaatgaaccctacattgatccgtca
attagtcgttggggattcttcattccggaaccgtataggcaagtgccgggtggtcttaat
aaggaacagctggccatttacgaagaattcgctcgccaatctcgtggacaaaaccacatc
caaaatacttcgaccgattcaatcaaacagctgccagatgtccttcaggaaggttttcct
gccatccccaatttgtccacccccgcggaacagccagctcttcctcatcagatgacacaa
gcacaacaagatgccggcgtgcagcaacaaactattgctaatgcacagcctcaattgaat
ggtttcttgcaatccgcaaatcctcgtgaaaaggtcgaaaagcttgttggtgatcttcaa
caagcagcccgcgatgcgcccgaagaccatatcaaagatctctggcgggacagccctatc
ttacaggaatacaaccaaattcttcgtgcgattttatcgtcacccaatggtgaagaactt
gcaaggttaaccgcaaccaaaatttgtagcaccctttatactcagaccgaaaagcctttg
gaaatcgaggttctcgtccatttgctctcaaaaatttgtgagctctcatcgctcgttgcg
cggtacacatgggcagtcctcgctgaagttgaagacgggcaaatgtttaatgttcccgtg
accgtggctttaatagatgctggcttgatagatctccaccgcgttgatttgatcctcgct
aaactgatcaaggaaaagaatgtggcagccctggaattgctcgcagcacttatggctcga
gtcctcttcaatgacgagccttccgcgctaagatccgatttctctggaagcttagctgca
atgaatcagtggcttattgaagacccaaatctcaatgtagccaaagacattattcaaaag
cttcatgaaactggtattccggagtctgtgaacgctttccttaccgaccaagctcgctcc
acgagggatcaaatggagtatatcttcagcgaatggatcggagtctacaaatttgccgga
gcgaatgacaagatgtacagcaccttccttaaagatatgcatcagagacaagtgatgaat
aaccaagaagattctgcattgtttttcagactgagcattgatatctctgtggctatgttc
gagcatgaatatcagaatttgggcggcaaccttgacgaggccttcctttacattgatgcg
ttggcgaagctggttgtcctgctggtgaaattccagggtgacggtgatggtgctgtgaag
aagagcaagccatcctatcttaattcaattctttcgctcctagtgctggtcttgaaccat
caccaagtgatgcggggcgacaacttcaaccagcgggtcttttttagactcttctctggc
atcctctgtgaatatgccatgagtggccttcagcaaagagaagagcataaggaaatgatg
cgcgtattctctgataaattcttgtctctccagccaaaacattgtccaggctttgtctat
ggttggttatcgttgatttcgcaccgtgtctttatggcgggcatgctcactatggaagat
cagtcgggctgggagccattctgcgaaatagtccaggtcatgctatcatacactggcgaa
cagttaaaacccggaaatatctcgttcgtggcaaaggacttgtacaaaggtgttttgcgg
atcttgctcatcctacaccacgacttccccgaatttgttgcagaaaaccatttccggttt
tgcacagttatgccggcacactgcagccagctgcgtaatcttgtgctcagcgcataccca
tcttccttccaaaagcttcccgaccctttcagagatggcttgaaggttgatcggttggat
gaaatccaccaggctcccaggattgcgggagacattgttgcgcctcttcaggctgctaac
atcaagaatgctgttgataacgccttgagaagtttctcggcgacggattccgcggttcag
caaatttgtgatgcggttgataatccctcggagaagtccaccggcctttacttcgcccct
atcaatgttgacatcgttctattggaagcgctcgtcctctatacaggtcaaagtgccgtt
tccgccactggccaaaaggccgggaccccagctcccaataacttgccacagtccgctttg
ctcgagaaattggtgaaggtcctcaatccagaggggcgctattatttccttagttcgatt
gcaaaccaactacggtatccgaatagccacacccattacttcagtaacgtaatgctggag
ttgtttggatcctatcctgcggatcagcaagggacggacattcgcgagcaaatcatccgg
gtgttacttgaacgactaatcgttcaccgcccgcacccatggggattgattatcacgctc
caagaactccttcagaacagcagctacccgttcttccgcctaccattcatccaagccgcc
ccagaggtcagtaaaaagattattacggaatgctatagcatggtgctgacttga
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integrated database retrieval system
