KEGG   Coccidioides immitis: CIMG_11527
Entry
CIMG_11527        CDS       T01114                                 
Name
(RefSeq) small nuclear ribonucleoprotein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
cim  Coccidioides immitis
Pathway
cim03018  RNA degradation
cim03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cim00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CIMG_11527
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CIMG_11527
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cim03019]
    CIMG_11527
   03041 Spliceosome [BR:cim03041]
    CIMG_11527
Messenger RNA biogenesis [BR:cim03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     CIMG_11527
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     CIMG_11527
Spliceosome [BR:cim03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    CIMG_11527
SSDB
Motif
Pfam: LSM API5 SM-ATX
Other DBs
NCBI-GeneID: 24163753
NCBI-ProteinID: XP_012213912
UniProt: A0A0D8JV03
LinkDB
AA seq 125 aa
MLPLGLLNASQGHPMLVELKNGETLNGHLVNCDSWMNLTLKEVVQTSPEGDRFFRLPEVY
VRGNNIKFLRVPEEVVEIARDQQQQNQPSTRGRGGAQQSRGDMGRGERGRGGGRGGRGRG
RGRGG
NT seq 378 nt   +upstreamnt  +downstreamnt
atgcttcctctaggtcttctcaatgcgtcgcaaggccatccgatgctcgtcgagctaaag
aacggagaaaccctcaatggtcacctggtcaactgcgacagttggatgaatcttaccctc
aaagaagtcgttcagaccagtcccgaaggagacagattcttcagactacctgaagtttat
gttagaggaaataatatcaaatttctcagagttccagaagaagttgtcgagatagctaga
gatcagcagcagcaaaaccaaccgtcaactcgtgggcgtggcggtgcacaacaatcccgt
ggtgatatgggacgaggagaacgcggcagaggcggaggtcgtggtggaagaggccgagga
agagggagaggaggatga

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