Ciona intestinalis (yellow sea squirt): 100170043 Help Entry 100170043         CDS       T01056                                  Symbol zf(zz)-7 Name (RefSeq) E3 ubiquitin-protein ligase MIB1   KO K10645   E3 ubiquitin-protein ligase mind-bomb [EC:2.3.2.27] Organism cin  Ciona intestinalis (yellow sea squirt) Brite KEGG Orthology (KO) [BR:cin00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04121 Ubiquitin system [BR:cin04121]     100170043 (zf(zz)-7) Enzymes [BR:cin01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      100170043 (zf(zz)-7) Ubiquitin system [BR:cin04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    Other single Ring-finger type E3     100170043 (zf(zz)-7) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Ank_2 MIB_HERC2 Ank SH3_15 Ank_5 Ank_4 zf-C3HC4_3 Ank_3 ZZ Ank_KRIT1 zf-C3HC4_2 Sina_RING ANK_LRRK2 zf-RING_5 Prok-RING_4 Hydro_N_hd Motif Other DBs NCBI-GeneID:  100170043 NCBI-ProteinID:  XP_009862485 LinkDB All DBs Position 1:8378799..8413508 Genome browser AA seq 1143 aa AA seqDB search MASNTSSNVNISARSASSSYQQGVGSRVVRGPDWKWGRQDGGEGHVGTVRCFESSEEVVI VWDNGTAANYRCSGQYDLRILDSAASGLKHNGSMCDTCRLQPIFGIRWKCAECHNYDLCS ACYHADKHHLRHRFYRIVTPDGERVLMESRRKSKKISSRGIFPGARVVRGVDWQWEDQDG GNGRKGKITKIQDWTSQHLRSAAYVLWDVGAKNLYRVGFEGMMDLKIVTDAKGPSFYRDH LPCLGQLNGQPSLPVTEFQLNDQVNIDLDLEIVQSLQHGHGGWTEGMFETLGTTGTVCGI DEDHDIVVSYSSGNRWTFNPAVLTKVTGADATVVGSSGNSPSEPKFEVGDLVQISSHVEH VKTLQRGHGEWSESMLAAVGKVGRVQQVYRDSDVKVDVSGTSWIFNPLLLSKIDQGQARS GENLSLLLKKLFESQVSGDINEELVKAAGSGDVQKCEEILQRPDASVNGQFAGHTAMQAA CLNGHLDVVSCLIQHDADLEIEDKDGNRAIHHSAFVDEAGVVELLVREGCDANARNKRRQ TALHIAVNRGHVWVVQTLLELGCHASLQDAEGDTPLHDAILKKRDDMLTFLLDAHADVTV TNNNGFNVLHHASLRGNPSAMCILLNKLTRPWIVDEKKDDGYTALHLAALNNHLEVAELL VKLGHANLDIQNVNQQTPLHLAVERQHTQIVRLLVREGACVNLTDKDGDSPLHEALRHHT LWQLRTLQDKHDVTVGKVLMGIGGQGADRHSSASIAQFLAANGADLNLKNKDQHNPLDLC PDPNLCKSLVKASAESNHPKLPNRHSSVLSPPSTSTNQNSSFSLHSTNVTQDEATGSSSL DDSSNPPPPCNNDVTINSVTSMADLRGGNLLENLPRSEPLSPMNNAKSKKSTSRGNSPNP STVQAITEPWKINNQHPELNECMICSDSPRDTILEPCGHSLACASCSDRIKKCLLCKETV TSKQVVEECCVCSDKQSSVVFKPCGHICACQACSNLMKKCIRCREPIESKLPFTECCGVV TRTPSPKSPQLTAMTQNSLTATENNFTSTVSNLNVTTPGNSHNNRHQNMANHLSKDSRNS EAEIRKLQQQLQDIKEQVMCPVCMDRIKNMIFLCGHGTCQLCGDRMTECPICRKPVEKRI LLY NT seq 3432 nt NT seq  +upstreamnt  +downstreamnt atggcctcaaatacgtcatctaatgtgaacatttctgcaagaagtgccagcagttcatat cagcagggagttggttcacgtgttgtgaggggacctgactggaaatggggccgacaggat ggtggggaaggtcatgttgggactgtcagatgttttgaaagctctgaagaagtagttatt gtttgggacaatggaactgcagccaactacagatgtagcggacaatatgatctaagaatt cttgatagtgcagcttctggtttgaagcataatggttcaatgtgtgatacatgtcgcttg caaccaattttcgggattcgttggaaatgtgcggagtgtcataactatgatctctgctct gcgtgttaccatgccgacaagcaccatcttcgtcatcgcttttaccggatcgtcactcca gatggagaaagggtattaatggagtcgcgaaggaagagcaagaaaatcagttcacgtggt atcttccctggtgctcgtgttgtaagaggagttgattggcagtgggaagatcaagatggc ggaaacgggaggaagggaaagatcactaaaattcaagactggacatctcagcacttacga agtgctgcgtacgttttatgggatgttggtgccaagaatttatacagagttggattcgaa ggaatgatggatctaaagatcgtgactgatgctaaaggaccttcattttatagagaccat ctgccctgccttggtcagttgaatggccagccatcattaccagtgactgagttccagtta aacgatcaagtcaacatcgaccttgaccttgaaattgttcaatcccttcagcacggacat ggtggatggacagaaggaatgtttgagacattaggaaccactggcacagtctgtggaata gatgaggatcatgacattgttgtgtcgtattcaagtgggaatagatggactttcaaccct gcagttcttaccaaagtaacaggcgctgatgctacagtagtgggcagcagtggtaactca ccaagtgaacctaaattcgaggttggagacctggttcaaatatcatctcatgttgaacat gttaaaacattacaaagggggcatggagaatggtcagagtccatgctagcagcagttggt aaagttggtcgtgtacaacaagtatatcgggacagcgacgtcaaagttgatgtttcaggc acatcatggatatttaatcctttactactaagcaagattgaccaaggacaagcaaggtcc ggagaaaacttgtctttgctgctgaaaaagttgtttgagtctcaagtttcgggcgacatc aatgaagaattagtgaaagccgcaggttctggcgacgtacagaagtgtgaagagattttg cagcgaccggatgcaagcgttaacggccaatttgcgggtcacacagcaatgcaagctgct tgtttaaacggacatcttgacgtggtgtcgtgtttgatacaacatgatgctgaccttgaa attgaggacaaagatggaaaccgagctattcatcattcagcatttgtagatgaagctgga gtagtggaactacttgttcgtgaaggatgtgatgcaaatgcccgtaataaacgacgccag acagccttgcatattgctgtaaatcgtggccacgtatgggtggtgcagactctgcttgag cttggctgtcatgctagtttacaggatgcagaaggtgacactccccttcatgatgccata ttaaagaagagggatgacatgttaactttcttgttggatgctcatgctgatgtcactgtt accaacaacaacgggttcaacgtattacatcacgcttctctacgtggaaacccaagcgcg atgtgcatattgttgaacaagctcacacggccttggattgttgacgaaaagaaggacgac ggttacactgcccttcatcttgctgcacttaataatcacctggaagtcgcggaattactt gtgaagttgggccacgcgaatctggatattcagaacgtgaaccagcaaacaccactccac ctagcggtagagagacaacacacacaaatagtgcggcttcttgtgagagaaggtgcatgc gtcaacttgaccgataaagacggggattccccactgcacgaagcattacgtcatcacacg ctgtggcagttgcgcaccttgcaggacaaacatgacgtcacagtgggaaaggttctcatg ggcattggcgggcagggtgccgaccgacacagtagcgcttctattgctcaattccttgcg gcgaacggtgccgatttaaacttgaaaaacaaagatcaacacaatccactggatctttgt ccggatcccaacctgtgcaagtcactcgttaaagcaagcgcagaatcaaatcacccgaaa cttccaaatcgtcattcatccgttctctcccctccttccacctcaaccaaccaaaactca tcattttctcttcattcaaccaatgttacacaggatgaagctactggttcatcatcacta gacgacagttcaaacccacccccaccctgcaataatgacgtaacaatcaactctgtgaca tcaatggctgatttacgaggcgggaatttgttggaaaacttacccagatcggagccactc tccccgatgaacaatgctaagtcaaagaaatctacatctcgggggaattcccctaatccg agcacagtccaagcgattactgaaccatggaaaataaataatcaacatccagaattaaat gagtgcatgatatgttccgactctccccgtgatacgattcttgagccttgtggccactcg ctggcgtgcgcgagctgcagtgaccgaatcaaaaagtgtctgctgtgcaaggagaccgtt acctctaaacaagtggttgaggaatgttgtgtatgctccgataaacaatcgtccgttgtt ttcaaaccatgcggtcacatatgcgcctgccaagcttgttcgaatctaatgaagaaatgc attcgttgtcgtgaaccaatcgaatccaaactccctttcactgaatgctgtggtgttgtt acaagaacaccttcacctaaatctccacaattaactgctatgacacaaaactcactaaca gctactgaaaacaacttcacgtcaacagtaagcaaccttaatgttacgacgcccggaaat tctcacaacaatcgccaccaaaacatggccaatcatttgtccaaggacagtcgtaacagt gaagctgaaattcgtaagttgcaacaacaactgcaggatattaaagaacaggtaatgtgt ccagtttgtatggacagaataaagaacatgattttcctttgtggtcatggtacgtgtcag ctttgcggagatagaatgacagagtgtccaatatgcagaaaacctgttgagaaaagaatc ttgttgtattga

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