Ciona intestinalis (yellow sea squirt): 100170067
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Entry
100170067 CDS
T01056
Symbol
zf(cchc/grf)-1
Name
(RefSeq) DNA topoisomerase 3-alpha
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03440
Homologous recombination
cin03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100170067 (zf(cchc/grf)-1)
03460 Fanconi anemia pathway
100170067 (zf(cchc/grf)-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cin03032
]
100170067 (zf(cchc/grf)-1)
03400 DNA repair and recombination proteins [BR:
cin03400
]
100170067 (zf(cchc/grf)-1)
Enzymes [BR:
cin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
100170067 (zf(cchc/grf)-1)
DNA replication proteins [BR:
cin03032
]
Eukaryotic type
DNA Topoisomerases
100170067 (zf(cchc/grf)-1)
DNA repair and recombination proteins [BR:
cin03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
100170067 (zf(cchc/grf)-1)
FA (Fanconi anemia) pathway
100170067 (zf(cchc/grf)-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_GRF_2
Motif
Other DBs
NCBI-GeneID:
100170067
NCBI-ProteinID:
XP_026693420
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Position
14:complement(153207..162941)
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AA seq
844 aa
AA seq
DB search
MFYKAAFIVLTHHRILMPRHASTFKVLSVAEKNDAAKRISDILSGHQYQVRNGFSKYNKI
YEFSYHMLGQNCAMSVTSLSGHLLNYNFAGIYKKWHSCHPLSLFDVEVEKIVTENMVDIK
RTLEREVRNSQALVIWTDCDREGENIGFEIINICRNIKPNIPVYRARFSEITDRSIKSAC
RNLQQPDQNTSDAVDVRQELDLRIGAAFTRFQTLRLQKVFPHVLSDKLISYGSCQFPTLG
FVVERYKAREQFQPEDFWKIEVTHTTTQHNDDGPVTSTFSWKRNRLFNELACRVLYANCM
EPPVVATVTNVSSRPRSKWRPVAMETVELEKLASRKLRINAKETMKIAETLYTQGYISYP
RTETNIFPKDFDLERLVGEQTNHPAWGNFARDLLALEGGPQPRNGHKSDQAHPPIHPTKA
ASNLSGNNARIYELIARHFLACCHRDAKGHETTVDIILGGEEFNAQGLMIIERNYLEVYP
YDRWNGKIIAVYNIGDEFEPTGLNMPGGRTTAPPLLTEADLIALMDKHGIGTDATHAEHI
ETIKQRMYVGLTSDQRFLPGELGMGLVEGYNLMGYEMSRPELRAELEFGSRYTNNQHTAS
NQHRGASNARQGNAHRGAGSRPGAGGSGGFGGNGPRGGGSRPGGGSGGHTGAGPGVLSSR
GSRGGVKKGGTRKKSTLAATRSDENVPACQCGEVSIVLTVRKDGPNTGREFYKCGKQNGG
CDFFMWVDNNNQSTQQQTSFTSGLNNRNIKSSIRVSGDVMCKCDIPATQRTVQKEGANKG
RMFYTCDKPRDAQCGFFEWCDSMQNTAPTPSTSHNQPRAAKRKRPPTCGLCKEVGHTKRG
CPNK
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgttttacaaagctgcttttatagttttaactcatcacagaatattaatgccacgacac
gcgtctacttttaaagtgttgagtgtggctgagaagaatgacgctgctaaaagaatatca
gatattttatcagggcaccaatatcaagtgagaaatggtttttcgaaatacaacaagatc
tacgagttcagctaccacatgctggggcaaaactgcgcaatgtccgttacttctctatct
ggtcatctgcttaattacaactttgctggaatttataagaaatggcattcttgtcatcct
ctaagtttatttgatgttgaagtggaaaagatagtgacagaaaacatggtggatatcaag
agaacattggaaagagaagttcggaacagccaagcgttagttatttggacagattgtgat
cgggagggagaaaatattggattcgaaatcattaatatttgtcgaaatattaaaccgaat
atacccgtgtatagagcacgattttctgagataactgacagatcaataaaatcggcgtgt
cgtaatctgcaacaacccgatcaaaacacgagcgatgcagttgatgttcgacaggaactc
gacctcagaatcggagctgctttcaccagatttcaaacccttcgtctgcagaaagttttc
cctcatgttttatcggataagctgataagttacgggagttgtcagtttcctacattaggg
tttgtggtggaaagatacaaagcaagggagcagttccaacctgaagacttctggaagatt
gaggtcacccacaccaccacccaacataatgatgatgggcctgtcaccagcacgttctca
tggaaaagaaatcgattgtttaacgagcttgcatgtcgggtgttgtacgctaactgcatg
gaacccccagttgttgccacggtaaccaacgtatcgagtcgcccccggagtaaatggcgt
cctgttgctatggagacagtagagttggagaaattggcttctcggaaattaaggataaac
gcaaaagaaacgatgaaaattgcagaaacattgtatacacaaggatacatcagttaccct
cgtactgaaacaaacattttcccaaaagattttgaccttgaaaggttggttggtgaacaa
acgaatcacccagcatggggaaactttgcaagggatttacttgctttagaaggaggacca
cagccaaggaacggacacaaatctgaccaagcccacccccccatccatccaactaaagct
gcatctaatctatctggcaacaatgcaaggatttatgagttgattgcgcgccatttcctt
gcttgctgtcaccgagacgcgaagggccatgaaacgacagtagacataatacttggtggt
gaggagtttaacgcacaaggtttgatgattattgagcggaattaccttgaagtttatcct
tacgaccgttggaacgggaagataatagcagtttacaatattggcgacgaatttgaaccc
accggtttaaacatgcctggtggaagaactacagctcctccattgttaactgaagcggat
cttattgcattaatggataagcatgggatcggtaccgacgccactcatgcggaacacata
gagacaataaaacaacgaatgtacgttgggttaacgagcgatcaacgatttctaccgggg
gaattagggatggggttggtggaaggatacaacttgatgggatatgaaatgtcacgccca
gaactaagggcagaacttgaatttggttccagatacacgaacaatcaacatactgcaagt
aaccaacatagaggtgcaagtaatgcaaggcagggtaatgcccacaggggtgcgggatca
agacctggtgctggtggctcaggaggttttggtggtaatggcccaaggggtgggggatca
agacctggtggtggtagtggtggtcacacaggtgctggtccaggtgttttgagttccaga
ggttctagaggaggtgttaagaagggtgggacaaggaagaaatcaacgttagcggcgaca
cgaagcgatgaaaacgttcccgcttgtcagtgtggggaggtttctattgttcttactgtg
aggaaagatggaccaaatactggaagggagttttataaatgtgggaagcagaatggaggg
tgtgacttctttatgtgggttgataataacaaccaatctactcaacaacaaaccagcttt
acctctgggttaaataatagaaatattaaatctagcataagagtatcaggcgatgtgatg
tgtaaatgtgatattcccgcaacccaacgcactgtacagaaggaaggggcaaataaaggg
aggatgttttacacttgtgacaaacccagggacgcacaatgcggtttctttgagtggtgc
gactcaatgcaaaatacagctccaacccccagtacttctcacaaccagccacgagccgca
aagcgaaaacgacctcccacatgtggattatgcaaagaagttggccacactaagagagga
tgtccgaataaataa
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