Ciona intestinalis (yellow sea squirt): 100176179
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Entry
100176179 CDS
T01056
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 3-like
KO
K05044
solute carrier family 6 (neurotransmitter transporter, GABA) member 11
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
100176179
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cin02000
]
100176179
Transporters [BR:
cin02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
100176179
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Gene cluster
GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
100176179
NCBI-ProteinID:
XP_002126541
Ensembl:
ENSCING00000007229
LinkDB
All DBs
Position
8:3965675..3970858
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AA seq
601 aa
AA seq
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MSEKKTDSGETKRETWGGKQEFILALIGYSVGLGNVWRFPYLCYDNGGGAFLIPYAIFVV
LAGIPLFFLEISLGQYTQQSCVKVWSKLVPAMKGIGYGSAVVNFMCAIYFVLVMSWSVLY
FVHSCIPGPLPWTSCGNWWNSEHCVLNANYKGMNATMLQQVSNTSGFASALHTTPNKTNN
TTIYSPENEFWNNYVLRKSDGIENIGSLENWPLILCFFGSWVVIYLCVFKGARTSGKVVY
VTAILPYVMLLILLIRGLTLEGASTGIMFFLRPDFSKLLSSQVWMQAGGQIFYSYGICFT
VLYAFGSYNPYNNNCYKQSVILASTCSLTSIFASFVVFSIIGHMSFVQGKDIDAVATSGP
GLVFLVYPVGLSLLPAPNLWSVLFFATLFMVGIDTQFAGVESCVTIFLDLWPNVGKGKYG
RELVSAMVCLLFIVLGLPLLTNGGIYIFELFNMYAVSGIALLWLAFFQSITIGWIYGVDN
YYENVKSMIGYYPSPYFKLCYKFFAPGISLFIFIFYCVKYAPLTLGQYVFPGWANAVGWF
LSLTSMLCVPGFFIAEICKSKGSVYQRIRKALNPVVINEKTSRDDVQCEKRFLEDVRNLA
I
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagaaaaaaacggactcgggagagacaaagagagaaacatggggaggaaagcag
gagtttatcctggctttaattggctactcggttggtcttggaaatgtatggaggtttcct
tatctgtgttacgataacggtggaggagcatttttaattccctacgcgattttcgttgta
ttggcgggcattcctttgttctttctggaaatttctttgggccaatacacacaacaaagc
tgcgtaaaagtctggagcaaactagttccagccatgaagggtatcgggtacggatcagcc
gtcgtaaactttatgtgcgctatctactttgtgcttgtcatgtcatggtcggtgctatac
tttgtgcattcatgtattcctggacctctcccttggacatcatgcggaaattggtggaac
tctgaacattgtgttttgaatgcaaactataaaggaatgaatgctactatgcttcagcag
gtttcaaatacgtccggtttcgcttctgcgcttcacaccacccccaataaaaccaacaac
acgacaatatattctcctgaaaacgagttttggaacaattacgttttaagaaaatcggat
ggaattgaaaatattggcagtttagaaaactggccgcttattctttgcttttttggttcc
tgggtcgtcatctacttatgtgtcttcaagggcgcgaggaccagtggaaaagttgtttac
gtcactgcgattttgccatacgtcatgcttcttattctactgattcgtggattgacgttg
gagggggcatcaacagggatcatgtttttcctaagaccagacttctcaaagcttctatca
tctcaggtttggatgcaggctggaggacaaatcttttattcatacggaatctgctttaca
gtcctatacgcattcggcagctacaatccatataacaacaattgctacaagcaatcagtc
attcttgcttcaacatgcagcctgacttcaatctttgcttcatttgttgtttttagcatc
attggccacatgtcttttgtgcaagggaaagatattgatgccgtagccacatccggtcct
ggtctcgtattccttgtttatccagttggtctctcacttttacctgctcctaatctgtgg
tccgttcttttctttgctaccctgtttatggtcggaatcgatacacagtttgctggagtt
gagagttgcgtcaccatcttcttggacttgtggcccaatgttgggaaagggaaatatgga
cgagagcttgtctctgcgatggtgtgccttctcttcatcgtgctcggcctgccactacta
accaacggaggaatctatatctttgagctcttcaatatgtatgctgtcagcgggattgcg
ctcttgtggcttgcattttttcaatctattacaatcgggtggatatacggtgtcgacaac
tactacgaaaatgtcaagtccatgatcggctactacccttctccatacttcaagctgtgc
tacaaattctttgcgccagggatttctctgttcatttttatcttctactgcgtcaagtac
gctcctttaactcttggccaatatgtgttcccgggttgggcaaacgctgtgggttggttt
ttatctctaacgtctatgctctgcgtcccaggattctttattgcagaaatttgcaaatcg
aaaggttcagtataccagcggataagaaaggctcttaaccctgtggttattaacgaaaaa
acttcgagagacgacgtacagtgcgagaaacgatttctggaggatgtccgaaatctagct
atttaa
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