Ciona intestinalis (yellow sea squirt): 100176532 Help Entry 100176532         CDS       T01056                                  Name (RefSeq) splicing factor 3B subunit 1   KO K12828   splicing factor 3B subunit 1 Organism cin  Ciona intestinalis (yellow sea squirt) Pathway cin03040   Spliceosome Brite KEGG Orthology (KO) [BR:cin00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     100176532  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:cin03041]     100176532    03036 Chromosome and associated proteins [BR:cin03036]     100176532 Spliceosome [BR:cin03041]  Complex A   U2 snRNP components    U2 snRNP specific factors     100176532  Complex B     100176532  Complex C    U2 SnRNP specific factors     100176532 Chromosome and associated proteins [BR:cin03036]  Eukaryotic type   Chromatin remodeling factors    B-WICH complex     100176532 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_MROH2B_C HEAT_GCN1 HEAT HEAT_EF3_N TPR_DNAAF5 Htt_N-HEAT_1 TPR_IPO5 HEAT_2 XMAP215_CLASP_TOG VPS15-like_hel HEAT_ECM29 DNA_pol_phi IFRD HEAT_Maestro Motif Other DBs NCBI-GeneID:  100176532 NCBI-ProteinID:  XP_018671322 LinkDB All DBs Position 1:complement(4535463..4548808) Genome browser AA seq 1343 aa AA seqDB search MATREDYVSEIEAIQKKKELIINEPPTADADDNENKEESAEKVKLGEGGFYDQEIYGGSK SKFAGYVTSIAPNEQEDDDEEEVVTTASLLGKRQTYTAPVALLNDIPQGQDIDPFADTRS KPIMHREDQYRQQRLHRTISPERSDPFADGGKTPDPKLAQYRDVMKHQSLNKEEREIRTK ITEKMNSGDMHVNGASKAAQAAAKKRRWDETPTVSGTTPKKRMTWDQAETPSHTPGLNRW EETPGRLKGGETPGAAVTPGPGTRAWAETPGHATPGAMTPGRTPAVGQTPAGGTPSTRKN RWDETPKTERETPGRSMGWAETPGRTDRAEDSVRDTPGASKRKSRWDLTPAAATPGNQTP SATPVFTPGGTPSSFTPKSAMGTPSGTPSMYTPSGVTPVGVKAMGMATPSANQLMSMTPE QLQAWRWEREIDERNRPLTDDELDTMFPEGYKVLPPPSGYMPIRTPGRKVTATPTPMGGS TGFHIQVEDKSMKGITDQPSGNLPFLKPDDIQYFDKLLVEVDEETLSPEEQKERKIMKLL LKIKNGTPPMRKSALRQVTDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILY KLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISVMRPDIDNMD EYVRNTTARAFAVVASALGIPSLLPFLKAVCRSKKSWQARHTGIKITQQIAILMGCAILP HLKNLVETIESGLEDEQQKVRTITALALAALAEAATPYGIESFDSVLKPLWKGIRTHRGK GLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCATDGV ESPYIKAEILPSFFKHFWQHRMALDRRNYRQLVDTTVEIANKVGAHVIVQRIVDDLKDEN EQYRKMVMETIDKILANQGAAEIDHRLEEQLIDGILYAFQEQTTEDVVMLNGFGTVVNTL GKRVKAYLPQICGTVLWRLNNKAAKVRQQAADLISRISVVMLACQEEKLMGHLGVVLYEY LGEEYPEVLGSILGALKSIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGR IADRGAEYVSAREWMRICFELLELLKAHKKSIRRAAVNTFGYIAKAIGPHDVLATLLNNL KVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKAMSFLFEYIGEM SKDYIYAVVPLFEDALMERDLVHRQIASSAIGHMALGVYGFGCEDALNHLLNYVWPNIFE TSPHVIQAVMSAIDGIRLSLGPNRLLQYCLQGLFHPARKVRDVYWKIYNGIYIGSQDSLV PAYPRIYNDDKNQYIRYELDYII NT seq 4032 nt NT seq  +upstreamnt  +downstreamnt atggccacccgtgaagattatgtctctgaaattgaggcaatacaaaaaaagaaagaactt ataataaacgagcctccaacagctgatgcggatgataatgagaataaggaagaatcagcg gaaaaagttaaattaggggaaggaggtttttatgatcaagaaatctatggcggttcgaag agcaagtttgctggttatgtcacttccattgctccaaatgagcaagaagatgatgatgag gaagaagttgttaccacagcaagtttactcggtaaacgacaaacatacactgctccagta gcattactaaatgacattccacagggccaagacatcgatccatttgctgacaccaggtct aagccaatcatgcacagagaggatcagtatcgacaacagcggttgcatcgaactatttct ccagaacgaagtgatccatttgccgatggagggaaaacaccggacccaaaactggctcag tatcgagatgtgatgaaacatcagagtttaaataaagaagaaagagagattcgaactaaa ataactgaaaagatgaattcaggtgacatgcatgtcaatggagcttctaaagcggctcag gctgcagctaaaaagcgcagatgggatgagacccctacagtctctggcacaacaccgaag aaaagaatgacctgggaccaagcagaaacaccatcacatactcctgggttaaatagatgg gaggaaacacctggtcggcttaaagggggtgaaactccaggggctgctgtaactcctggt cccggtactcgagcatgggctgaaaccccaggtcacgctactcctggtgcaatgacccca ggtcgtacaccagctgttgggcaaactcctgcaggtggtactccaagcacccgtaaaaac agatgggatgaaacaccaaaaacggagagagaaacacccggtcgttcaatgggttgggcc gagacaccaggcagaacagatcgtgcagaagatagtgtacgtgatactcctggtgcaagt aaacgaaaatctagatgggatttaactcctgcagcggcaacacctggtaatcaaacaccg tcagccactccagtcttcactcctggtgggactccttcttctttcactcctaagtcagcc atgggaaccccgagtggcacaccttcgatgtatactccgtctggagttactcctgttgga gtaaaagcaatgggtatggctacaccaagtgcaaaccaactcatgtcgatgacaccagag cagctacaagcatggaggtgggagagagaaatcgatgaacggaatcgtcctctcactgat gatgaacttgacacaatgtttcctgagggatataaagttctacccccacccagtggatat atgccaatccgaacacctggtagaaaagtaacagcaactccgacaccaatgggtggaagt acagggtttcatattcaagtagaggataaatcaatgaaaggcatcacagatcaaccaagc ggtaatttaccatttcttaaaccggatgatattcaatatttcgataagttgcttgtggaa gttgatgaagagacattgtctcctgaagaacaaaaagaaagaaaaataatgaagttgttg ttgaaaattaagaatggaactccaccgatgaggaagagtgctttaagacaggtaacagac aaagctcgagagtttggtgcaggacccctgttcaaccagattctacctttgctaatgtct ccaacattagaagatcaggagaggcacttactggtcaaggtgattgatcgaatattgtat aaactcgatgacttggttcgaccttatgttcataagatacttgtagttattgaaccttta ctgattgatgaagattattatgctcgtgtcgaaggtagagaaatcatttcaaaccttgca aaggcagccggtcttgcaactatgatttctgtcatgagacctgatattgacaatatggat gaatatgtgagaaatacaacagcacgtgcatttgctgttgtagcatcagcattgggtatt ccttcattgttgccatttcttaaagctgtttgtcgaagcaagaaatcttggcaggctcgt catactggtatcaaaataacccagcaaatagccatcctaatgggttgtgccattcttcct catcttaaaaatcttgttgaaaccattgaatctgggttggaagatgaacaacaaaaggta cgcacaattactgccctcgctttggctgctcttgccgaagcagcaacgccgtatggtatt gaatcgtttgatagtgtattgaaacctttatggaagggtatacgaacacacagaggaaag ggtcttgctgcttttttgaaagcgattggttaccttatcccactcatggatgctgagtat gcaaattactacacaagagaagtgatgttgattctcatccgggaatttcaatctccagat gaagagatgaaaaaaattgtgctaaaggtagtaaagcagtgttgcgcaactgatggtgtt gaatctccctacattaaagcagagattcttccgtcattttttaagcatttctggcaacat cgcatggcattagatcgaagaaattaccgacagcttgtcgacacaacagttgaaattgca aataaggttggagctcatgttatcgtgcaacgaattgttgatgatttgaaagatgaaaat gaacaatacaggaagatggtgatggaaaccattgataagatcttggcaaatcaaggagct gcagaaattgatcatcgattagaagaacaacttatcgatggaatactttatgctttccaa gagcaaactacagaagatgttgttatgttgaatggatttggaactgtggttaatacactc ggaaaaagagtaaaggcttatctgccccagatctgtggtactgttctgtggaggttgaac aacaaagctgcgaaagttcgtcagcaagctgctgatcttatttcacgcatctctgttgtg atgttggcttgccaggaagagaagttgatgggtcacttgggtgtcgtgctgtatgaatat cttggtgaagaatatccagaagtattaggctcgattcttggggctcttaaatctattgta aatgttattggcatgcacaagatgacgcctcccatcaaagatcttttaccacggcttact ccaattcttaagaacagacatgagaaagtgcaagaaaattgtattgacttggttggtcgt attgctgacaggggagcagagtatgttagtgcgcgagagtggatgagaatttgctttgaa ctactcgagttgctaaaagcccacaagaaatcaattcgtcgtgcagcggtgaacactttt ggttacatcgcgaaagcaatcgggccacacgatgtcctcgcaacacttctaaacaacttg aaagtacaggaacgacagaatcgtgtttgtacaactgttgccatcgctattgtagcagaa acctgctctccattcacagttttacctgcgctaatgaatgagtacagggtacccgagcta aatgtccagaatggggttcttaaggcgatgtcattcctgtttgaatacattggtgaaatg agcaaagattacatctatgctgttgttcctctcttcgaagacgcgttgatggagcgtgat cttgttcatcgacagattgcatcgtctgccatcggacacatggctcttggtgtttatgga tttggttgtgaagatgcgctgaaccatctacttaactatgtgtggccaaacatatttgaa acatctcctcatgttattcaagcggtgatgtcagctattgatggaattagattatcactc ggccccaatcgtttgcttcaatattgcttgcaaggattgtttcatccagcacgaaaggtt cgagacgtttattggaaaatatacaacggcatctacattggatcacaagatagtcttgtt ccagcatatccaagaatttacaacgatgacaaaaaccaatacattcgttatgaacttgac tatattatatag

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