Ciona intestinalis (yellow sea squirt): 100177945
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Entry
100177945 CDS
T01056
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD-like
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03022
Basal transcription factors
cin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100177945
09124 Replication and repair
03420 Nucleotide excision repair
100177945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
100177945
03400 DNA repair and recombination proteins [BR:
cin03400
]
100177945
Enzymes [BR:
cin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100177945
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
100177945
DNA repair and recombination proteins [BR:
cin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
100177945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HBB
DEAD_2
Helicase_C_2
ResIII
DEAD
AAA_11
SesA
CDK5RAP3
BLM_N
AAA_34
Motif
Other DBs
NCBI-GeneID:
100177945
NCBI-ProteinID:
XP_002126055
LinkDB
All DBs
Position
Unknown
AA seq
760 aa
AA seq
DB search
MKINVDGLLVYFPYEFIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTATLLSLIVAYQ
YEYPEIISKLIYCSRTVPEIEKVLEELRRLMEYYEKEVGEVPKLCALALSSRKNLCINAS
VRGARIGKEVDTKCHQLTASHVRIKQKHDASVELCSFYEQFDANGREEALPAGVYNLDDL
RRYGKLRNWCPYFLARYTITHANIVVYSYHYLLDPKIADLVSKELSKNAVVVFDEAHNID
NVCIDSMSVTISRRTLDKCSQNIQSLQNHLEKSRQTDEDKLRNEYKRLVEGLREANIARE
ADVVLANPVIPDDVLKESVPGNIRNAEHFLAFMKRFNEYLKSRLRVRHVVSETPLSFIHD
AFEQVCIDKKPLRFCSERLRSLLQTLELANMSDFSNLTLLANFASLVSTYNKGFVVLIEP
FDDRTPTIVNPILHFSCMDASVAIKPVFSRFQSVIITSGTLSPLDMYPRILDFHPVTMAT
FTMTLARQCLCPVVVTHGNDQVAISSKFETREDVAVIRNYGNLLVEMTKIVPDGIVCFFV
SYAYMENIVASWYEQGILENVQKNKLLFIETQDAAETSMALDKYQEACENGRGAVLLSVA
RGKVSEGIDFTHHHGRAVIMFGIPYVYTQSRILKARLEYLRENYQIRESDFLTFDAMRHA
AQCVGRVIRGKTDYGVMVFADKRFARSDKKGKLPRWIQEHLSDGVCNLSTDESVHITKRF
LRIMAQPFSQEDQLGLSLLTREQLESEAMRGRIQQIAHQI
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagataaacgtagacggtttgttggtgtattttccttacgagttcatttaccccgaa
caatattcctatatgctggagttgaaacgaacattggacgcgaaaggacacggggttcta
gagatgccgtcgggcacggggaaaacggcgacattattatcgctcatagtagcgtaccaa
tatgagtacccggaaattatttcgaaactcatatattgctcgaggacagtaccggagatt
gaaaaagttttggaagaattgagaaggttgatggagtattatgagaaagaagtgggggaa
gtccctaaactgtgcgcactcgcgttaagctcgaggaaaaatctttgcatcaacgcaagt
gtaaggggagcgcgaattgggaaagaagttgacaccaagtgtcatcagcttactgcttca
catgtaaggatcaaacagaagcatgacgcaagtgttgagttatgttctttctatgagcag
tttgacgcaaacggacgagaagaggctttaccagcaggggtttataatttggatgatttg
agacggtatggaaagttacggaactggtgcccgtatttcctcgctagatatacaatcacc
catgctaatattgtggtgtatagctaccattatttactggatcctaaaattgctgactta
gtttcaaaggagctatcaaaaaatgccgttgttgtttttgatgaggcacataatattgat
aacgtgtgtattgactccatgagcgtcacaattagcagacgaactttggataaatgctct
cagaatattcaatctctgcaaaaccacctcgaaaaatctcgtcaaacggatgaagataaa
ttgaggaatgaatacaagagattggtggaggggttgagggaggcaaatatagcacgggaa
gcagatgtagttcttgccaaccctgtaatacctgatgatgtgttgaaggaaagtgttcca
ggaaatatacgaaacgcagagcattttcttgcgtttatgaagagatttaatgaatatttg
aaaagtcgtttgcgtgtacgacatgttgtgtccgagacaccattatcttttatccatgac
gcgttcgaacaagtatgtatcgataaaaaaccattaagattctgttccgagagattacgt
tcattactacaaacccttgagcttgctaatatgtcagatttctccaaccttacactccta
gcaaactttgccagccttgtaagcacttataacaaagggtttgtagttttaatcgaacca
tttgatgatcgtacaccaaccatagtaaaccccatcctacacttcagctgcatggatgca
tcagttgcaattaaacctgttttctcacgtttccaaagtgtaataataacatcaggaact
ctatcccctctagacatgtacccacgtattctagattttcacccggtaacaatggctacg
ttcactatgactttagcaagacaatgtctatgcccagtggttgtaacgcatggtaacgat
caagttgcgatatcgtcaaagttcgagacacgagaagatgttgcagttataagaaactat
gggaatctacttgttgaaatgacaaagatagttccggacggtattgtttgtttctttgtg
tcatacgcttacatggagaacattgtggcaagctggtatgagcagggaatactcgagaat
gttcagaaaaataaacttctgttcattgagacacaagatgctgcggagacaagcatggct
ttggataaataccaagaagcttgtgagaatggtagaggagctgtgttgttatctgtagcg
agggggaaagtatctgaaggtattgacttcacccaccatcacggtagagctgttataatg
tttggtattccttatgtttatacacaatcaaggatcctaaaagcaaggttggaatatttg
agggagaattaccagattcgtgaatcggattttttaacatttgatgccatgcgacatgca
gcacagtgtgttgggagggttataagggggaagacggattatggggtgatggtgtttgcg
gataaaaggttcgctcggagcgataagaaagggaaacttccaagatggattcaagagcat
ctaagtgacggggtgtgtaacttatccacggatgagtcagtccatattacaaagaggttt
ctgcgtatcatggcccagcctttctcacaggaagaccaacttggtttgtctttgttaaca
agagagcaacttgagtccgaagccatgagagggaggattcaacagatcgcgcatcagata
taa
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integrated database retrieval system
