Ciona intestinalis (yellow sea squirt): 100184256
Help
Entry
100184256 CDS
T01056
Name
(RefSeq) exosome complex component RRP42-like
KO
K12589
exosome complex component RRP42
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100184256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100184256
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
100184256
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
100184256
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
100184256
NCBI-ProteinID:
XP_002127184
UniProt:
F6PLY6
LinkDB
All DBs
Position
1:complement(7233080..7236625)
Genome browser
AA seq
290 aa
AA seq
DB search
MAKVMLGESEKWFIIHGIQDDMRNDGRSCEDYRHIEVETGVVSNTHGSSRLRLGSSELLV
GVKVELGSPDPKAPNEGLIHFHVDCSPNADPSFQGRGGEDLSANISCILTRIYCNKSSID
LNTLGIIPHKQCWVVHVDVLILECGGNLLDAVSIAVKAALHNTGVPNIQVTDGDEGTQEI
SLPDDPNDVKFINTVNAPVLVTISKVGSRHVVDASSEEELCCNASLVMGVTKRGRTTGMR
KMGGGSLDPESIPEMIETGKNIGRQLHISLDKLLKTEQGMAEDIEKAGYL
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atggctaaagttatgctcggtgaatcggagaagtggtttatcatacatggaatccaggac
gacatgcgtaatgatggcaggtcttgtgaggattatcgtcacattgaagtggaaactggg
gtagtttcaaacacacatggatcatcaagattacgattgggaagtagtgagctcttagtt
ggtgtgaaggtagaactcggatctcctgatcctaaagcaccaaatgaagggttaattcat
ttccatgttgattgttccccaaatgcagatccatccttccaagggagaggtggggaggat
ctcagtgcaaatatatcttgtattttaacaaggatatactgcaataagtcgtccattgac
cttaacacacttggtatcataccacacaaacaatgctgggttgtacatgtagatgtgctg
atattggaatgtggtggtaacttgttggatgctgtatcaattgcagtgaaagctgctttg
cataacacaggggttccgaacattcaagtcacggatggtgatgaaggaacacaagagatt
agtcttcctgatgatccaaatgatgtcaaatttataaatacagtcaacgccccagtactt
gttacaatatccaaggttggtagtcgacatgtggtggacgcctcatctgaagaagaactt
tgttgcaacgcttcacttgtgatgggagtcactaagagaggaagaacgacagggatgcgg
aagatgggcggaggaagtcttgatccagaaagtatcccggagatgattgagactggaaaa
aacattggtcgccagcttcatatttctcttgataagctgctcaaaactgagcaaggaatg
gctgaggatatcgaaaaagctggttatttatga
DBGET
integrated database retrieval system
