Ciona intestinalis (yellow sea squirt): 100187262
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Entry
100187262 CDS
T01056
Name
(RefSeq) agrin isoform X1
KO
K06254
agrin
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04512
ECM-receptor interaction
cin04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100187262
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100187262
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cin00535
]
100187262
Proteoglycans [BR:
cin00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
100187262
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_1
Laminin_G_2
Kazal_2
NtA
Kazal_1
Laminin_EGF
CFAI_KAZAL
Laminin_G_3
EGF
Trypan_PARP
SEA
Motif
Other DBs
NCBI-GeneID:
100187262
NCBI-ProteinID:
XP_026691460
LinkDB
All DBs
Position
8:complement(5325756..5382648)
Genome browser
AA seq
2198 aa
AA seq
DB search
MPGSTKISFNLEMCRGRTNMTMYIRTLILLLSFLYLINTGAECYRIKRAVMLSMDPQPAV
ECLDRTTTEKNSTSTVILTGTVQYCDVIRAGSYKCNIKIWRVMKGNSLAMNLITIQKQGI
LTSMYKKKYVDVYGLGNSAFCKSNVERADTRIFFLNKLNNRLVVSASLDRITLKNLENTQ
KVIEGKRIKEEPKKPRDPCQEVLCGYGASCQAVDEDTTTCVCPPVSCSASPTTEDILAPI
CGSDGVTYPNECRLRAAECMAQHRIKIKATTSCEAHRQAINFLRTKPTRRRHGFRVPPTE
SSLTTLKPTEPVDDRLCSTVTCDFNAACVVRPSDDGSLAPECECPTCENVAVEPVCGSDQ
RSHRSSCDLRRASCVEGRVITVVRNSACNPCDIFNIESGIFLPMCSGSCTLDGNGEPQCC
ETLKCAANETELVCGSDGNTYENECSLRRSACKTAKSITVIKQGSCPTKKEMTAVRGSLS
IQADENCPGNCDLQNKEFTDFLTRMDTSVNQNLMSQNNQDIDGKTLGDFQITEVRQGSAI
LLFRAYSSTTSQPIAVNSNANSNNEWIYDRLYSDDNGALKVVARENGLNLVTARNPRDDF
VVEDVCMDLQCEHGAMCKITKSGSTLTPSCSCENVGAAESLPVTHACKQATDGNGVHRIF
MNEAEARGESCTSNQILDFKDICQEAPIDPCAEIGGCSGVGEACIVMNGVGSCQCITCGE
EYQPVCTNDGQTFRSHCEVRRHNCLSKTNLIILSIGSCESQCDDIKCWYGAQCEVIAQGT
TCVCPTVCVKTYLPVCGSDGQTYSNECEMVVAACPQKLEVTVAHAGPCDEPTHEGSGSGA
GDECGCLFGASCDTTIDDEDANCVCNFNCEAIGVAVCGSDGKTYPNMCELEKAQCNQQTP
ISLVSKGICKVGCVQSRYGCCEDGTTPAKGVARSGCPEKCLCNEHGSYGNACNPTTGQCV
CRPGVGGLRCDRCRPGYWNFRALAEKLFTGCMSCRCHEFGSTRDDCDQMTGRCSCKVGVT
GLKCTDCVSDGSWVTSSVCDNAATAAPSAVSCEDLVCRVGQECVEINNAFECQCPSLTSC
DNMDEAVVCGTNGITYADRCQLKVLACKVGVNVTVAHEGACMSNLEPLVEGPIVRPPLVP
VTIETTRMVQITTTTHPVPVVEPEPTPNAKPEPEPTSKPEPEPEPTPNAKPEPTPKSEPE
PEPTSKPEPEPEPTSNPEPEPTPNAKPEPTSNPEPEPERTTKTPLVPKSEPETLATSKAT
PATTVLPVPTTTLSVTKTPKTTAATDEVECMYGDDEDCGGSGSGEGEVDNTEAPSVIPEI
PEVPTPAAVQFIGQGTFYSIDGNSLRHSKSLDVPGSEEFINYSNLVEAEIMSLISNPPLL
DSVRAVRISSFRSASIFWGGVIVTFELHLTSGSDAGAIQDALNAASSENRYFTISELTGK
QNMFVHDAPYEPVLMEYDDYDIEPELYAERMLEEYTTPVPALSNYTEDGPWTVPHFSGAS
YAEFRKVNAFSEITIQLKFRSADPEGILFYSGQLNNGRDFISLAINNGYVEFRFDMGSGM
LKLRSKRPINSTQWHTIVARRIRRDGMLQVDADPPVQGTSPGHASGLNLDSNFFVGGFNT
YLEDQRYQKQTGVDKGLTGCIEEVRINENQLNITSNSDHCVSTFRLAECGASPCIPNPCQ
HSANCFITMQANIFTNKCECKDNYEGETCQRENTGLSVKKKPNNPCSPNPCQGGAKCIEM
PGEEEFTCKCPPGRSGSLCMTNQSAALQGPSFMPAFAGDSYLELPSLGKDVRSIMSIEIL
FYSNQPDGLIFYNGQKKSGKGDFVSLNLKNGFLEFKYNLGQGAANIRSANPVSLNEWHIV
VLSRAMRTGDLSLDNFDPVYGTSPKAIPPVKNKSQHSFLDLKQPMYVGGFPDGVKFNPEA
GVTTGLSGALQKFQVNGVNLPISPAGSVSYFNVIAFNAHTCYRNPCDNGGVCHPRGAEYM
CVCLPYYTGDNCEQEHSTDLLQDEQATAIYLDGTTKIMYRNAVKAMPNDFREQLSDNSRA
RTHNNYEIVFRTTARHGLLLMVGKAREGVDYIALAIHDGRLHLRFDLGSGPAHVISDQQI
NNGEWTTVKVNRKMNIGSLQVNNGLIKTATSPGLTNHLNSDGMLWLGGVDYRPRGIGLYK
SFFVPFVGCVASAKIHDESIDLRADAFNSPVVRSCNGR
NT seq
6597 nt
NT seq
+upstream
nt +downstream
nt
atgcccggctcgaccaaaatctcgttcaatttggaaatgtgtcgcgggcgaacgaacatg
actatgtacattagaaccttaatcttattactgtcgttcttgtatttgataaacactggt
gctgaatgctaccgcatcaaacgagcagtaatgctttcaatggaccctcaacctgcagtt
gaatgcttggaccgtacaacaaccgaaaagaattcaacttcgactgttattctcactggg
acagtacagtactgtgacgtaataagagcaggctcttataaatgcaacattaaaatatgg
cgagtcatgaaaggaaactctctcgcgatgaacctcataacgatccagaagcaaggcatt
ctgacctctatgtacaaaaagaagtacgttgacgtatatggacttggaaactctgctttt
tgcaagtcaaatgtggaacgggcagacaccagaatcttctttttaaataaattaaacaac
cgactcgtcgtatctgcttcgttggatcgaatcactttgaaaaacttggagaatacacag
aaggtcatagaaggaaaacgcatcaaagaagaaccgaaaaagccacgcgatccctgccaa
gaagtgctttgtggttacggtgcgagttgtcaggcggttgatgaagacacaacgacttgc
gtgtgccctccagtgtcctgttccgcctccccaacaacggaggacattctcgctcccatt
tgtggctcggatggcgtcacctaccctaacgaatgcagactgcgtgcagcagaatgcatg
gcgcagcaccgcatcaaaattaaagccaccacatcgtgcgaagcccaccgtcaggccata
aactttttacgcactaagcccactcgtcgtcgtcatggttttagggtgccacccacagaa
tcaagtttaaccacactgaagcccactgaaccagtggacgaccgactttgttcgactgtt
acatgcgacttcaacgctgcttgcgttgtgcgtccctcagacgacggctctttggcgcct
gaatgcgaatgcccgacctgcgagaacgtagcagttgagccagtctgcggttcggaccaa
cggagccaccgctcgagctgcgatctgcggcgtgcgtcgtgtgtggagggacgtgtgata
actgtcgtacggaattcagcatgtaacccttgcgacattttcaacatcgaaagtggaatt
ttcttaccaatgtgcagtggatcttgcacactagatggaaacggggagccccagtgttgc
gagacactaaaatgtgcggcaaatgaaactgaacttgtgtgtggaagcgatggaaacact
tatgaaaatgaatgttctcttagaaggtctgcatgcaaaacagccaaatccataactgta
atcaagcaaggcagctgcccaacgaagaaagaaatgacagctgtaagaggttcactgagt
atacaagcagatgagaactgtccgggaaattgtgatttacaaaataaagaatttactgat
ttcctaactagaatggacacctcagtaaaccagaacctcatgagtcaaaacaaccaagac
attgatggcaagacattgggtgacttccaaataactgaagtcaggcagggaagtgcaatt
ctgctattcagggcatactcgtctactaccagtcaacccattgcagtaaattcgaatgca
aattcgaacaacgaatggatatatgatcgcttgtacagtgatgataatggcgcactgaaa
gtggtagctcgggaaaacggtctgaacctcgtaactgcaagaaacccacgcgatgatttt
gttgtagaagatgtatgcatggacctccaatgcgagcacggagctatgtgtaagatcact
aaatctggatccaccctcaccccctcctgctcctgtgaaaatgtgggtgctgcagaatcg
cttccagtcacacacgcgtgcaaacaagcaaccgatggcaatggtgtgcatagaatcttc
atgaatgaagctgaagcaaggggggagtcttgcacttcaaaccaaatactggactttaaa
gacatttgccaagaagccccaattgacccctgtgcagagatagggggttgcagtggtgtg
ggtgaggcttgcattgtaatgaatggggtcggttcatgccagtgtatcacctgtggcgag
gaataccaacctgtctgcacgaatgatggacaaactttcagaagccattgtgaggtgcgg
agacacaactgtttatcgaaaaccaacctgataattctaagcataggttcttgtgaaagt
caatgtgatgacattaagtgttggtatggagctcaatgtgaagtgattgctcaaggaact
acatgtgtttgtccaactgtttgtgtgaaaacctacttaccagtttgtggaagcgatggg
cagacttacagcaatgaatgtgaaatggtcgtagcagcatgtccacaaaaacttgaagta
actgtagcgcatgctggtccttgtgacgagccaacacatgaaggttcgggttctggtgcg
ggcgacgagtgtggttgtctctttggtgcctcgtgtgacacaactatcgacgacgaggat
gcaaattgtgtttgtaacttcaattgtgaagcaattggtgttgcagtatgtggttcagat
ggcaaaacttaccccaatatgtgtgaacttgaaaaggcccagtgtaaccagcaaacacca
atttctctcgtttcaaagggaatctgtaaagttggatgtgtgcaaagcagatatggttgc
tgtgaggatggaacaacaccagcaaagggtgtggcaagatctggttgcccagagaaatgc
ttgtgcaatgagcatgggtcttatggcaatgcatgcaacccaactacaggacaatgtgtg
tgtagacctggtgttggaggacttagatgcgaccggtgcagacctggctattggaacttt
agagcacttgctgagaaacttttcactggttgtatgtcttgtcgttgccatgagtttggt
tcaaccagagatgactgtgaccagatgaccggcagatgctcatgcaaagttggtgtaact
ggtttgaagtgtaccgactgtgtgagtgatggttcatgggtcaccagtagtgtgtgcgat
aatgcagcaacagctgctccaagtgccgtttcgtgtgaggacctggtgtgtcgtgtcggg
caggaatgcgttgagataaacaatgcgtttgaatgccagtgcccttcgctgacctcgtgt
gacaatatggatgaagcagttgtttgtgggaccaatggcatcacctacgctgatagatgc
cagcttaaagtgttggcatgcaaagtgggagtcaatgtgacagtcgcacatgaaggggct
tgcatgagcaaccttgagcctttggttgaaggaccaatagttcgcccaccactcgtacca
gtaacaatagaaaccacacgaatggttcaaatcacaacaaccacacatcctgtacctgtt
gttgaaccagagcctacaccaaatgcaaagccagagccagaacccacatctaaacctgaa
ccagagccagaaccaacaccaaatgcaaaaccagagcccacaccaaaatctgaaccagaa
ccagaaccgacgtcaaaacctgaaccagagccagaacccacgtcaaaccctgagccagaa
ccaacaccaaatgcaaaaccagagccaacatcaaaccctgaaccagagccagaacgaaca
actaaaaccccgttagttccaaaatctgaaccagaaacacttgcaacttcaaaagcaaca
ccagcaaccacagttctaccagttcccaccaccaccctttcggtgacaaaaacaccaaaa
acaacagctgctacagatgaagttgaatgcatgtacggtgatgatgaagattgtggtgga
tcaggaagtggggaaggggaggttgataacactgaagctccatcagtcattcccgaaata
ccagaagttcctacaccagctgctgttcaatttattgggcaaggcacgttctactctatt
gatgggaattcactgaggcattcaaagtcattagatgttcctggatctgaagagtttatc
aactacagtaaccttgtggaagcagaaatcatgtcattaataagcaaccccccactcctg
gattccgtgcgtgccgtgcgtatcagttccttccgatctgccagcatcttctggggagga
gttatcgtcacatttgagctccatttgacatccggatcggatgcaggagcaatccaggac
gccttaaacgcagcgtcgagtgaaaatcgttacttcactatctcggagctaacaggcaag
cagaatatgtttgtacacgatgcaccctatgaaccagtgttgatggaatatgatgattac
gacattgaacctgaactctatgctgaaaggatgttagaggaatacacaactcctgtacca
gcactttcaaactacacagaagatgggccatggactgtccctcacttcagtggggcttct
tacgccgagttccgtaaagtgaatgccttcagtgagatcacaatccagttgaagtttcgc
tcagcagatcctgaagggattctcttctacagtggccagctcaataacggaagggatttt
atttctctcgcaattaataatggctatgtggaattcagattcgacatgggttctggcatg
ttaaagcttcgtagcaagcgtccaatcaacagcacacagtggcataccatagtagctcgt
agaataagaagagatggaatgttacaagtagatgcagatcctccagtacaaggaacatca
cctggccacgcctcaggattaaatctagattccaatttctttgttggagggtttaataca
taccttgaagaccagagataccagaagcaaacaggagtagacaaaggattaacaggatgc
atagaagaagtgaggataaatgaaaaccagctaaacattacatccaactctgatcactgt
gtttcaacgttccgccttgcagaatgtggtgcatctccctgcattcccaacccatgccag
cattcagccaattgtttcatcacaatgcaagcgaatatcttcacaaacaaatgcgaatgc
aaagataattatgaaggtgaaacatgtcaaagggaaaatactggactttcggtcaaaaag
aaaccaaacaacccgtgctcgcctaacccttgtcagggaggtgctaagtgtatagagatg
cctggtgaggaggaattcacctgcaaatgtcctccaggaagatcaggatctctttgcatg
accaaccaatctgctgctctgcaaggcccgtccttcatgcctgcatttgccggcgattca
tatttggaacttccatctttaggaaaggatgttcggtcaatcatgtcaatagaaatctta
ttttattcaaatcaacctgacggtttaattttctacaacgggcagaaaaaatctggcaaa
ggagattttgtttccctcaatctaaagaatggattccttgagtttaaatacaaccttgga
caaggggcagcaaatatcaggagtgccaaccctgtaagtttgaatgaatggcatattgtg
gtgttatctcgtgccatgagaactggagacctttcattggataattttgatccagtgtat
gggacatcaccgaaagccattcctcctgttaaaaacaagagccaacactccttcttagac
cttaagcaacctatgtatgttggtgggttccctgatggtgtcaaatttaatccagaagct
ggagtgacaactggactgagtggtgcattacaaaagttccaagtgaacggtgtgaacctg
cccatctccccagctggtagtgtctcttacttcaatgtaatagcattcaacgcccataca
tgttatcgcaacccatgcgacaatggtggtgtatgccatccacgtggagcagaatatatg
tgcgtgtgcttaccttactacacgggagataactgtgagcaagaacattctactgacttg
ctacaagatgaacaagcgactgccatttatttggatggaacaactaagataatgtatagg
aatgcagtgaaagcaatgccaaacgattttcgagagcaactaagtgacaattctcgtgca
cgaacacacaacaattatgaaatcgtgttccgcactactgctcgtcacggtctactgctc
atggtgggcaaagcgagggagggggtcgattatattgcactcgcaatccatgacggtcgt
cttcatcttcgttttgaccttggttctggtccagcgcacgtaatatccgaccagcaaatc
aacaacggagaatggacaactgtaaaagttaacagaaaaatgaacataggaagtttgcaa
gtaaacaacgggttaataaagacagcgacctcaccagggttaactaatcacctgaactct
gatggaatgttgtggttaggtggcgttgactaccgaccgcgaggtattggtctttacaaa
tctttctttgtcccgttcgtcggctgcgtggcctcagcaaagatccacgacgaatcaatt
gatttacgggctgacgcgtttaattctcccgttgtgcgttcgtgtaatggtcgatga
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integrated database retrieval system
