Ciona intestinalis (yellow sea squirt): 101242693
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Entry
101242693 CDS
T01056
Name
(RefSeq) E3 SUMO-protein ligase RanBP2
KO
K12172
E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03013
Nucleocytoplasmic transport
cin03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101242693
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
101242693
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
101242693
03110 Chaperones and folding catalysts [BR:
cin03110
]
101242693
04121 Ubiquitin system [BR:
cin04121
]
101242693
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
101242693
Chaperones and folding catalysts [BR:
cin03110
]
Protein folding catalysts
Peptidyl prolyl isomerase
Cyclophilin
101242693
Ubiquitin system [BR:
cin04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
101242693
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ran_BP1
WH1
TPR_1
TPR_2
TPR_CcmH_CycH
TPR_16
TPR_8
ANAPC3
IR1-M
TPR_19
TPR_12
TPR_11
CIAPIN1
Motif
Other DBs
NCBI-GeneID:
101242693
NCBI-ProteinID:
XP_026691293
LinkDB
All DBs
Position
8:complement(1565478..1604275)
Genome browser
AA seq
2723 aa
AA seq
DB search
MSLTPSEVSKIIEKSTATSNPQELPLKGLHFGKLWYKAGDYNSAAQWIVKYLKTFDRDTS
AHKLLGDCYEKLSEIEAALSCFKRSLQIKPNQPELLLHIVELYLNPGPAQNPNKAQIWLD
KAAASLPGNATVFKMKMELMLAQQASPSVLEKAILQELKRRSNDPALHVQYVSFMRTQDR
LEDAYAYCVKIENILDSASIRSDYKWSSCVVSTYKEHTEKLQNNQQHSHHIAQLMLLEAL
SRFIWVCLEDNKQQKALEKLQMMDECLSSVLSNKAIGDWKVLAAEMEAQLCWLAATFLIQ
QAAKNEKPWGEASDLAAVLFSSSVSKSIPSSSCAWSMHCLNHQPYLPSRVQRNAAQRLSQ
SSHMMWILSAQGEEGWIAKLRENLDQSTVGLAVFQSLFHNTNSSSSYLCNTTSLASVACF
IPTVDEMMAYDNVASASCKLDMLIWLGIRWMKMDMTVDFLHWVKSSFPNLQMVTSNSSAG
ASLWSLSLLDIEAFIAACVYTTEKKAQHWESAATLNHRQLSSTTLPLPLCRKLTTDLQNK
WWSAAVKLSNKKNVTAEEAGKLKPILQRGLECLRGVGNHGLEVVLITKLAKYFASKSYVL
QQETGTSTSWFLYQRRAALYWSLALPDLMKSSDGRVVHQSKAKERLFSSIFNELNSEKAS
SLLSEAYMCHGELAAQENRFDEALSFYSKATIPQASFCQAHLYRQMAENVHLKTPNLPLF
DLDQKKEALMRKYRRCLEITLTRLQQHPDDNLHERTVRLITSPRHSPLRNQPVTNTTANK
SGNDSILAVPSKQSTPKMNETSHTILSGIEERDTNVLVDTISSLTSALSNLQMEMGFIRE
EQKRNMTSYYSPSAVHPTATNIPGYQHMMMSPNFISQQHDRMHAQNQFTPQRPFTPVHPG
YYPGRGVTTPVPGRPLPGQMPSIDPYQQQQQPAYYSPTINPYASSYQPDLNKYTMPTYHQ
PQAPILPAYQNQTFTPEPMPATYKTNQPPQPNLLTQRLQNKDAEILQQKLSQSLSGSPAP
PNASMGLPLSSIPPKNLFTPTSIPFVPPVTETPKPVFAKQVEPSVAPMSLVQKLLLEDKH
SSRAISAADVTPTKDFQFLGNFVNLKQGETMKFQSPEQMDRENQELDAQEHADAEDSSNN
DTGPHFDPIVALPDLVEVSTGEENEDVLFQERCKLFRWDRSEWKERGIGNMKVLKHKVNA
KVRLVMRREQVHKVCCNQYVSSSTSLSQMANSDKAMIWFALDFAEDEPREEKLAAKFKTH
EIAVNFRDTVNQEAAKVGKGKTQKSAPSAEPSQPNSNKPDKEKSTSALTTTTTLAAAASS
FKFKMPTNVTATDSQPEPEISKPSIFGNLAGAIQTGFGGTGSEGGIRPGAFKFSFGSPKP
KATTPVPAEDKDEGKKDEDARSPSSNLDTSEGPHIDPIVDLPNLVDVGTGEENEEAIFCS
RAKLYRYIDAQWKERGLGEMKILRHKNSNKYRVVMRREQVLKICANHCIAPAMQLKSYGD
TGKAWTWSAMDFSDPELDPQHEVFAVRFKTVELANEFKENFEKAFSVRTTDKGSSLPPPT
TPSSASVAFLRKDQQEQKLQEQKLEEQKLEEQKLEEQKLEEQKLQEQKSSGSFKITKEAG
SWNCNDCYAGNSAKHATCPCCGSANPNQPAPAPVTGANTNAASNASAFKFGVPTSTTAPK
FKFGEQASSSPRPASTCLENILLGKNVSTTTNAQTTTDQKFSFKFGGDLSKPAASSKFQF
GSPQPTDNKEPVKEHTALQRTGQTPTNSSFSFKLANSNNSTGDGKPFSFGSQTTAATGLF
SAPSFGAPPPNTTTTTNQTSQPKFPTMDSENEEENGDESSQDEENDDDYSTEESEGSYED
EEEEDFVQNHQSPMSKFTAPKTEGITVGNKQSEKDAEQDEDDVICVGEVLPSQELQEKAK
SLQLHPSFYNYLKDGEEADSEESSATASDKPETENLEKPALKSDATKPVEVSTSTFAFGS
NTGDAGIKSFADLAASSSSGFKFGATFTPPTSQPVWSSDGKPIFSTTKNNNSDLYQEEEE
RDIHVEPIAKLPDLVTVVTGEEGERTIYSQRSKLFRWDKTLKQWKERGLGDICIKHNQEN
GKFRIVMRREQVFKVCANHYITSKMKLTPMPDSDRTWTWIAADFADGEETEIENFAIKFK
TCELANLFKEKFEECQVLIDDTNATTTSAFQETTTDLINQAEKMKSELDFFKDKLSVKQK
IDLENTLTEGAEVKSLPKLPDLALTPLVKQHQKDKERIQSETSPPTDDKQADKENVEVTR
GRTRNTSISLSKFEFNMKVDPTMPEHGSHKTRNISVCSATSTEEADIHVEPIVPLPDKVD
VPTGEEQDQVLFENRVKLFVFHRESKQWKERGLGRVRILQNLNNYRIRLVMRREQVFKVC
LNHFITEAIHFNFKENSDKVLVWAATDFSDPDKPNGEMLQFAMKLKSAETAINFLNTVQD
GNEAFSVKRLLDPVSVLEDKSEINTSVQDASNASQQSENGNTSVHKSPVKSTKPAFSFAN
VATPFGNKNKPLFSDIVFGTPKTQPAAPTTKFTFDASSISFNFGSTSTPATSAPPFQIAP
AVMQKPAASKSLFGVVQPSTGNNDASQQKEQNTIIGQHSSKFQFDMATADNDQNGVDTNV
GEKETKKVEKDAKPVELVETDTNDEKDSEKDDDVIFVWEAVPTQSQLERSRKLQLPPCFF
LYEDNPDLEGSLKCSVLEIIKIE
NT seq
8172 nt
NT seq
+upstream
nt +downstream
nt
atgtctctcactccaagtgaagtttccaaaattatagaaaaatcaactgcaacatctaat
cctcaagagctgccactgaaaggtctgcacttcggaaagttatggtacaaggcgggggac
tacaacagtgccgcccagtggatagtaaagtacctgaaaacatttgaccgagatacaagt
gcacacaaactgctaggggattgttatgagaagttgtccgaaattgaagctgcattatca
tgctttaaacgctcactgcaaataaagcccaatcaacctgagcttcttctccatattgta
gagctgtacttgaatccaggccctgctcaaaatccaaacaaagcccagatttggttggat
aaagcagctgcttcattgcctggcaatgcaacagtgttcaagatgaagatggagcttatg
ctagcacaacaagcatcaccatctgtattggaaaaagcaatccttcaagagttaaaaaga
agatcaaatgaccctgcacttcatgtgcagtatgttagctttatgaggacccaagatcgg
ctggaagatgcttatgcatattgtgtaaagattgagaatatattggattctgcgtcgata
agatctgactataaatggtcatcatgtgttgtcagtacatacaaggaacacacagaaaag
ttacaaaataatcaacagcattcccatcatattgctcaactgatgctcctggaagctctt
tcccggttcatatgggtttgcttagaggataacaaacaacagaaggcactggaaaaactg
caaatgatggacgaatgcttgtcatcagttttatccaacaaagcaattggagattggaaa
gtattagctgctgagatggaagctcagttatgttggctggctgcaacttttctcattcaa
caagctgcaaagaatgaaaagccatggggtgaagctagtgacttggcagcagtgcttttc
tcttcgagtgtttcaaagtcgataccaagtagctcatgcgcgtggtcgatgcactgcctt
aaccatcaaccatatctaccaagtcgtgtgcagagaaacgcagcccagcgactcagtcaa
tccagtcatatgatgtggatattgtcagcacaaggagaagaaggatggattgcaaagcta
agagaaaacctggaccaatcgaccgttggtttagcagtattccaatcccttttccacaac
actaattcatcatcatcatatttatgcaacacaacatcacttgcatcagtcgcttgcttc
attccaactgtagatgagatgatggcttatgataatgttgcttccgcatcttgcaagctt
gacatgcttatatggcttggtataaggtggatgaaaatggacatgactgttgattttctt
cactgggttaaatccagctttcctaatctacagatggtcaccagtaacagcagtgcaggt
gcttctctgtggtcattaagtctgcttgacattgaggctttcattgctgcgtgcgtctac
acaaccgaaaagaaagcgcaacactgggaaagtgcggcaacactgaaccaccgtcaactg
tcaagcacaacgttaccactcccactctgtcgcaagctcactactgatctacagaataaa
tggtggagtgcagctgtgaaactttccaacaagaaaaatgttactgctgaagaagcaggg
aagttgaaaccgattctccagcgaggtctagaatgtttgcgaggtgtgggcaaccatggt
ttggaagttgtacttatcaccaagcttgcaaagtactttgcatcaaagtcatacgttctt
caacaagaaactggaacttccacttcctggttcctctaccagcgccgtgctgccctctac
tggtcacttgctcttccggacctcatgaagtcctcggatgggagagtagttcatcagagc
aaagcaaaagaaagattgttttcttctattttcaatgagctgaattctgaaaaggcttct
agtctattatctgaagcatacatgtgccatggtgagcttgctgcacaggagaacagattc
gacgaagctttatctttttacagcaaagcaacaataccccaggcttccttctgtcaggcc
cacttgtacagacaaatggctgagaatgttcatttaaaaactcccaaccttcctttgttt
gatcttgatcagaaaaaagaagctctgatgagaaagtatcgtcgctgcctcgagatcaca
ttaactcgtctccagcaacatccggatgacaatcttcacgagcgaactgttcgtcttatc
acaagtcctcgtcatagtccattgcgcaaccaacctgttaccaacacaacagcgaataaa
tctggcaacgattctattctggccgttccaagcaagcagtcaactccaaagatgaatgaa
acatcgcataccattctatcagggattgaggaaagagataccaatgtacttgtggatacc
atcagctcactcacatctgctttgtccaacttgcaaatggagatgggttttataagagag
gaacagaaaaggaacatgacgagttattacagtccaagcgctgtccatccaactgccact
aacataccaggatatcagcatatgatgatgagtccaaatttcattagccagcagcatgat
cgcatgcatgcacaaaatcagttcacaccccagcgcccgtttacccctgtacaccctggg
tattaccctgggagaggggtcacgacaccagtacctgggcgaccactgccaggccagatg
cccagcattgacccttaccaacagcaacaacaacctgcctactacagccctaccatcaac
ccctatgcatcttcataccaaccagaccttaacaaatacaccatgcccacttaccaccag
ccacaagctcccatactaccagcttatcaaaaccaaacctttaccccagaaccaatgccg
gccacttataaaactaaccaaccaccacaacccaatcttttgacccaacgtttacaaaac
aaagatgccgaaatattacaacaaaagttaagtcagtcgctgtctggctctccagcgccc
cctaatgcgagtatgggactgccattatcttccattcctccaaaaaatctcttcacgcca
acatccattccatttgtgcctcctgtaactgagacgcccaaaccagtctttgctaagcag
gttgaaccttcagttgctcccatgtcacttgtgcaaaaacttttgttagaggacaaacat
agttcgcgagccatatctgctgctgatgtaactccaaccaaagatttccaattccttgga
aactttgtcaacttaaagcaaggtgaaacaatgaagttccaatctccggagcaaatggat
cgagaaaatcaagaactggatgcgcaggagcacgctgatgcggaggactcaagcaacaat
gacacaggacctcactttgatcccatcgtggctcttccggacttagtggaggtgagcacg
ggagaagagaatgaggatgttctcttccaggagcgatgcaagctcttcagatgggatcgc
agtgagtggaaagagagaggaatcggaaacatgaaagtgctcaaacataaagtgaatgcc
aaagttcggctcgtaatgagaagggaacaggtgcacaaagtctgctgcaaccagtatgta
tcgtcaagcacctcactatcacagatggcaaactccgacaaagccatgatatggtttgct
ctcgattttgctgaagatgaacctcgtgaagagaaacttgctgccaaattcaaaacgcac
gaaatcgctgtaaatttccgtgacacagtcaaccaagaagctgcaaaagttggaaaggga
aaaactcaaaagtcagctccatctgctgaaccaagtcagccaaatagtaacaaaccagac
aaagaaaaatccacatctgctttaacaacaacaacaacattggcggcagcagcttccagt
tttaaattcaaaatgccgacaaatgtaactgcaactgacagtcaacctgaaccagaaatt
tccaaaccctccatatttggaaatctggctggagcaattcaaactggttttggtggaact
ggttcagaaggtggtatccgacctggtgcgtttaaatttagttttggttcgccgaaaccg
aaagctacaacaccagtgccagcagaagataaagacgaggggaagaaagatgaagacgca
aggtctccctcttctaatctggacacaagtgaaggacctcatattgatcccattgttgat
cttcctaatctagtggatgttggaacaggagaagagaatgaagaggcaatattctgcagc
agagcaaaattataccgatatatagatgcacaatggaaagaaagaggtctcggagaaatg
aaaattcttcgtcataaaaatagcaacaaatacagggttgttatgagaagggagcaagtt
ttaaaaatatgtgcaaatcactgtattgcccctgccatgcaactgaagtcatacggtgac
acaggaaaagcgtggacgtggtcggcaatggacttttccgacccagagctcgaccctcag
catgaggtgtttgctgtgcgctttaaaaccgttgaacttgcaaacgaatttaaggaaaat
tttgaaaaagccttttccgttagaactactgataaaggatcctccctccctcctcccacc
actccatcctccgcatctgttgcgttcctccgaaaggatcagcaggagcaaaaactgcaa
gagcaaaaactcgaggagcaaaaactcgaggagcaaaaactcgaggagcaaaaactcgag
gagcaaaaactccaggagcaaaagtcctccggatctttcaagatcactaaagaagcgggg
tcatggaattgcaacgactgttatgcgggcaacagcgctaaacatgcaacatgtccttgt
tgtggatcagccaatccaaaccaaccggccccagccccagttacaggtgctaatacaaat
gcagccagcaatgcttctgctttcaagtttggtgtcccaacttctacaactgcacctaag
tttaaatttggagagcaggcttctagcagtcctagaccagccagtacttgcttggaaaac
attttacttggtaaaaatgtcagtaccaccaccaatgcacaaacaacaaccgatcaaaag
ttttcgtttaaatttggtggcgatttatcaaaaccagctgcaagttccaagtttcagttt
ggttcaccgcaacctacagacaacaaggaaccagtaaaagaacacacagctctacaacga
acaggacaaactccaacgaattcaagtttctcattcaagttggctaacagcaacaattca
acaggtgatggtaaaccattcagttttggttcccaaaccactgcagcaaccggtttattc
tctgcaccatcttttggtgcgccaccacccaacaccaccaccacaaccaaccaaacttca
caaccgaaatttccaaccatggatagcgagaatgaggaggaaaatggagacgagagtagt
caggatgaagaaaatgatgacgattactccacggaggagtctgagggaagttacgaagat
gaggaggaagaagattttgttcaaaatcatcaatctccaatgagcaagtttacggctcca
aaaactgagggtataacagtcgggaataaacagtcggaaaaagatgcagaacaagatgaa
gatgatgtgatctgtgttggtgaggtcctcccatcccaggagctacaggagaaagcgaag
agcctccaacttcatccttcattttataattatcttaaagatggggaagaagcagactct
gaagagtcaagtgccactgcatctgacaaacctgaaaccgaaaatcttgaaaaaccagct
ttaaaatcggatgctactaaacctgttgaagtcagcacatcaacatttgcgttcggtagc
aatactggagatgcaggaataaagtcatttgcggatcttgctgcaagttccagctctggt
ttcaaatttggagcgacttttacaccaccaactagtcaaccagtttggagttctgatgga
aaaccaattttttcaacaacaaaaaacaacaatagtgacttgtatcaggaggaagaggag
agggatatccatgttgaaccaatcgcaaagctccctgacctggttaccgtggtaacagga
gaagagggggagaggacaatttactctcagcgatcaaaattatttcgctgggacaagact
ttaaagcaatggaaagaaagaggtttaggagatatttgcatcaagcataatcaagaaaat
ggaaaattccgaattgtcatgcgacgtgaacaagtttttaaagtttgtgcgaaccattac
atcacatccaagatgaaacttaccccgatgcccgactccgaccgtacatggacgtggatt
gcagcagatttcgctgacggcgaagaaacggaaatcgaaaattttgccatcaagtttaaa
acttgcgaactcgccaacttgttcaaggagaagtttgaagaatgccaggtactaattgac
gacacaaacgcgacaaccacatctgcttttcaagaaactacaacagatctcatcaaccag
gcagaaaaaatgaaatccgaacttgattttttcaaggataaactttctgtgaagcagaaa
attgaccttgagaatacattgactgaaggtgctgaggtaaaaagtcttcccaaactacca
gaccttgctttaacacctctcgttaaacaacatcagaaagacaaagaaagaattcaatct
gaaacaagtcctccaactgatgacaagcaagctgacaaagaaaatgttgaagtgaccaga
ggcaggacaagaaacacctctattagtctcagcaagtttgaatttaacatgaaagtagac
cctactatgccagaacatggttcgcacaaaacaagaaacataagtgtgtgttcggctaca
agcactgaagaggcagatatacatgttgaaccaattgttccattacctgataaagtagat
gttcctactggggaagaacaagaccaggttttgttcgaaaatcgtgtgaagttgttcgta
tttcatcgtgaatcaaagcaatggaaagaaaggggtttgggaagagttcgaattctacaa
aacctaaacaattatagaatacgacttgttatgagaagggaacaggtgtttaaagtttgt
ttgaaccactttatcacggaagcaatccactttaatttcaaagagaattccgataaagta
cttgtgtgggcagcaactgacttctcagaccccgataaaccaaatggagagatgcttcag
tttgcaatgaaactgaaatcagcagaaactgcaatcaatttcttgaacacagtacaagat
ggaaacgaagctttttcagtcaagaggttgcttgaccctgtgtctgtacttgaggataaa
tcagagataaacacaagtgtacaagacgcatcaaatgcttctcaacaaagtgaaaacggg
aacacttctgtccacaaatccccagtaaaatccaccaaacctgctttctcattcgcaaat
gttgcaacaccgtttggaaacaaaaacaaaccacttttcagtgacattgtgttcggcaca
ccaaagacacaaccagcagcaccaacaacaaagttcacatttgatgcaagctcaatatct
tttaactttggcagcacaagcacaccggccacaagtgccccaccgttccaaattgcccct
gctgtgatgcaaaagccagcggctagcaaatccttatttggtgttgtgcaaccttcaact
ggaaacaatgatgccagtcaacaaaaagaacaaaacacaataattggtcaacactcctca
aaatttcagtttgacatggcaacagcagataatgatcaaaatggagtagacaccaatgtt
ggtgaaaaggaaactaaaaaagttgaaaaggatgcaaaaccagtagaacttgtcgaaacg
gacacaaatgatgaaaaagattctgaaaaagatgatgatgttatttttgtttgggaggcg
gtgccaacccagagtcaactagaacgatcacgaaagctacaactcccaccatgtttcttt
ctgtatgaagataacccagatctagaaggtagtttgaaatgttcggttttagaaataata
aaaatagaatag
DBGET
integrated database retrieval system
