Ciona intestinalis (yellow sea squirt): 108949276
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Entry
108949276 CDS
T01056
Name
(RefSeq) protein SMG9-like
KO
K18735
protein SMG9
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
108949276
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
108949276
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NB-ARC
MMR_HSR1
ABC_tran
AAA_14
Motif
Other DBs
NCBI-GeneID:
108949276
NCBI-ProteinID:
XP_018667457
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Position
5:2531144..2533003
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AA seq
530 aa
AA seq
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MNDSGNSGSQPYFINRASAAGKKKRFRDHEGRSMEYQHDSPTNSYGANRPDTLRTSKDSG
DDQDKSNFPLSQPNTKPVILAKPAGKSSQGSNLTPDGEKTSPWQEVSASPSGPIAPKLSM
SFTKSPSVGDKKNLFRTSSDSKFRNSASSYLVRQGLAQAAASSSNVQNLNENSAAKSKDP
GFWKRSVKLLDSSLHWLDGGIELLQDQPDFLVVGVIGMQGVGKSTVMSLIGGNKLSDLEK
YYLFKQQTSDIKERAEHMTTGIDVAVTAERLILLDTQPILSPSLIEQSVPFDRKSPTDYN
GSVNIEVQSLQVTAFLLTVCHVVIVVQDWFTDSNVYRFLQTAEMLKPVTPPPTHDSGGGS
DCDPSELQPVVLFVHNKLENHLFSIRSIAAMNEVMYNLTKFSSLHCRGTLSLIETNLYAG
LASLVHGESEVNSFLLPDVNYTDEEEEKYDVTKLSHDPSDRQFLSLPNYVGRPNTVMLTE
TLRKMILTMPRHQLTHHSLTEKQWFHYAARTWEAIRKSQLVSEYNRLLCG
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgaatgattctggaaactctggtagtcagccgtactttataaaccgtgcatcagcagct
ggtaagaaaaaacgatttcgtgatcatgaaggtcgaagcatggaataccaacatgatagc
cccactaattcttatggagccaatcgacctgacactctacgtacttctaaagacagtgga
gacgatcaagataaaagtaatttccccctttctcaaccaaatacaaaaccagtaatcctg
gcaaagcctgctggtaagtcttcacaaggttcaaatttaactccagatggagaaaagact
tctccatggcaggaagtatctgctagcccatctggacccattgccccaaaattgtcaatg
tcattcactaaatcgccttcagtaggtgataaaaagaatctttttcgaacctcctctgat
tcaaagtttaggaactcagcgtcttcttatcttgttaggcagggcttggcacaggcagct
gcatcttcaagtaatgtacaaaacttaaacgaaaactctgctgctaagtcaaaagatcca
gggttttggaagagatcagtaaaactgctggattcgtccctacactggcttgatggtggt
attgaacttttacaggaccagcccgattttttagttgttggagtcattggcatgcaaggt
gtaggaaaatccacggtaatgtccttaattggaggaaacaaactaagtgacttagaaaaa
tattatctgtttaagcagcagacttctgatataaaggaaagagcagagcatatgactact
ggaattgatgtagctgtcactgcagaacgactaatattactcgacacgcagccaattcta
agcccatcgttaattgaacaatctgtcccattcgacaggaagagcccaacagattacaat
ggttctgtaaacattgaagtccaatctttacaagtgactgcatttttactcactgtttgt
catgttgtaatcgttgtacaagattggttcacagacagtaatgtatacagattcctacag
actgccgagatgcttaaaccggtgactccacccccaacgcatgacagtggtggagggtct
gactgtgacccttcagagctccagcctgttgttctttttgttcacaacaaactcgaaaat
catttgttctcaatccgaagtatagctgccatgaatgaagtgatgtataatttgaccaag
ttctcaagcctacactgccgtgggacattgtctctcattgaaacaaacctatatgctggt
ttagcttcacttgtacatggagaatctgaggttaattcattcttgcttccagatgtaaat
tatacagacgaagaagaggaaaagtatgatgtaactaaactatctcatgacccgtcagac
cggcagtttctatctctccctaactatgtaggtcgtccaaacacggtcatgctcacagaa
accttgcgtaaaatgatattaacaatgccgaggcaccaacttacacaccattcattaact
gaaaagcagtggtttcactatgctgcaagaacatgggaggctattcgtaaatctcagttg
gtttcggaatataatcgacttctgtgtggttga
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