KEGG   Citrus sinensis (Valencia orange): 102622302
Entry
102622302         CDS       T02983                                 
Name
(RefSeq) pre-mRNA-processing protein 40A-like isoform X1
  KO
K12821  pre-mRNA-processing factor 40
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102622302
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cit03041]
    102622302
Spliceosome [BR:cit03041]
 Complex A
  U1 snRNP components
   U1 related factors
    102622302
 Complex B
    102622302
SSDB
Motif
Pfam: FF WW FF_RHG35_4th WW_TCERG1 WW_2
Other DBs
NCBI-GeneID: 102622302
NCBI-ProteinID: XP_006486884
LinkDB
Position
8:join(1766884..1766925,1767595..1767666,1767758..1768096,1768182..1768379,1768503..1768579,1769001..1769070,1770419..1770471,1770571..1770628,1770758..1771116,1771201..1771273,1771379..1771474,1771557..1771625,1771698..1771775,1771928..1772014,1772108..1772142,1772325..1772430,1772662..1772742,1772819..1772911,1772984..1773037,1773133..1773249,1773403..1773501,1774055..1774102,1774180..1774272,1774353..1774460,1774569..1774633,1775166..1775268,1776094..1776378,1776510..1776641)
AA seq 1029 aa
MAEMANNAPYSGAQVPHQPPMVGSMDPPRGFGPPIPSQYRPLVPAPQPQQYVPMASQHFQ
PAGQGGLIMNAGFPSQPLQPPFRPLMHPLPARPGPPAPSHVPPPPQVMSLPNAQPSNHIP
PSSLPRPNVQALSSYPPGLGGLGRPVAASYTFAPSSYGQPQLIGNVNTGSQQPMSQMHVP
SISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSAD
GRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPD
ELKLAREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSADISSSTVEVIVSSPVAVV
PIIAASETQPALVSVPSTSPVITSSVVANADGFPKTVDAIAPMIDVSSSIGEAVTDNTVA
EAKNNLSNMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLE
AKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEE
RRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDE
LKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEI
FQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKV
KDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDF
KASVLEDATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKRLEDEFFDLLCSVKEISAT
STWENCRQLLEGSQEFSSIGDESICRGVFDEFVTQLKEQAKDYERKRKEEKAKREKEREE
RDRRKLKQGRDKERAREREKEDHSKKDGADSDHDDSAENDSKRSGKDNDKKHRKRHQSAH
DSLDENEKDRSKNPHRHNSDRKKPRRLASTPESENESRHKRHRRDNRNGSRKNGDHEDLE
DGEYGGESR
NT seq 3090 nt   +upstreamnt  +downstreamnt
atggctgaaatggccaataatgctccttattctggtgcacaggtgcctcatcagcctcca
atggttggctctatggatcctcctagaggttttggtccacccataccctctcaataccgg
cctctagttccagcaccacagccacaacaatatgttccaatggcttctcaacattttcag
cctgcaggacaaggtggtcttataatgaatgctggatttccatctcaacctctgcaacca
ccatttcgtccgttaatgcatccgttaccagcaagacctggccctccggctccaagccac
gttccaccaccaccacaggtaatgtctttgccaaatgctcagccaagtaaccacatcccg
ccatcatcactacctcggcctaatgttcaagctctaagtagctacccacctggtttaggt
ggcttgggaagacctgttgctgcatcatatacttttgcaccatcttcatatggccaacca
caactaattggtaatgttaatactgggagtcagcagcccatgtctcaaatgcatgttccc
agtatttctgccgggggacaactgggtgtgtctgtgagccagagtactgtctctagtaca
ccagtgcagcctactgatgaacaaatggcagctaccactgcctctgctccgctacctact
cttcagcctaagtctgcagaaggggtccaaactgattggaaagagcatacatctgctgat
ggaagaagatattatttcaacaagaggacaagagtatctacttgggataagccttttgaa
ttaatgacaactattgagagagcagatgcatcaaccgactggaaggaatttacaagtcct
gatggacgaaaatattactacaacaaggttaccaagcagtcaaagtggtcattaccggat
gagttgaagttggcccgcgaacaagctgaaaaggcatctataaaaggaacacaatcagaa
acatcccctaattctcaaacgtcaatttctttcccttcctctgtggttaaagcaccatct
agtgctgacatctcatcttccacggttgaagtgatagtatcaagcccagttgcagtggtt
ccaatcattgctgcaagtgaaacacaacctgctttggtctctgttccatcaacctcacct
gtcataacttcgtctgtggtagcaaatgcagatggttttccgaaaactgtagatgctatt
gcaccaatgattgatgtctcatcaagcataggagaggccgtaactgacaatacagttgcg
gaggcaaagaataatttaagcaacatgtcagcttctgatcttgttggtgcttcagataaa
gtcccaccaccagtgacagaggaaaccaggaaagatgctgtcagaggtgaaaaagttagt
gatgccttggaagagaagacagttgagcaggagcattttgcatacgccaataagctggag
gctaaaaatgcctttaaagcacttttggaatctgcaaatgttgggtctgattggacttgg
gaccaggccttgcgagcaataattaatgacagaagatatggtgctctaagaacacttgga
gagcggaagactgctttcaatgagtacttgggtcaaaagaaaaaacaagatgctgaggag
aggaggcttaagctgaaaaaagcacgggatgattacaaaaagatgttggaagagtctgta
gagctgacatcatctactagatggagcaaagcagtaactatgtttgaaaatgacgaacgt
ttcaaagctctagaacgagaaagagaccgcaaggatatgtttgatgatcacttggacgaa
cttaaacaaaaggaacgagcaaaggcgcaggaggagcgcaagcgtaatataattgagtat
aggaaatttttagaatcctgtgatttcattaaggcaaatacccagtggagaaaggttcaa
gaccggttagaggctgatgaaagatgttcacgtcttgataaaatggatcggctggaaatt
tttcaggaatatttaaatgatttagagaaggaagaggaggagcaaaggaagatacagaag
gaagaactgagcaagactgagcgcaaaaatcgtgacgaatttcgaaaattgatggaagca
gatgttgctttgggcactcttacagccaaaactaactggcgtgactattgcatcaaggtt
aaagattcacctccatatatggcggtcgcatcaaatacctcaggctcaactccgaaggat
ttgtttgaagatgttgttgaggagctacaaaaacagtttcaagaagacaaaactagaata
aaagatgcagtgaagttaagaaagatcactttgtcatcaacttggacgtttgaagatttt
aaggcttctgttttagaggatgctacatctccgcctatatcagatgtcaacttaaagctg
atatttgatgacttgctgataaaagtgaaggagaaggaagaaaaagaagctaagaaacgt
aaacgtcttgaagatgagttttttgatctgctatgttctgtcaaggagatatctgcaact
tctacatgggaaaattgcagacaacttttggagggtagccaagagttcagttccattgga
gatgaaagcatctgcaggggggtatttgacgaattcgtaacacaactcaaagaacaggcc
aaagactatgaacggaaaagaaaggaggagaaggccaaaagggaaaaagaaagagaggaa
agagataggaggaagctgaagcagggaagggataaagagagagcacgtgaaagagaaaaa
gaggaccactcaaagaaggatggagctgacagtgaccatgatgattcagctgaaaatgac
agcaaaagatcaggaaaggacaatgacaagaaacaccgaaagcggcatcagagtgcccat
gatagcttggatgaaaatgagaaagatcgatctaagaacccccatagacataacagcgat
cgcaaaaaaccaagaaggcttgcatcaacacctgaatctgaaaatgagagcaggcataag
agacataggagggataatcgtaatggttctcgtaaaaatggtgatcatgaagatcttgaa
gatggggaatatggtggggaaagtcggtag

DBGET integrated database retrieval system