KEGG   Citrus sinensis (Valencia orange): 102630812
Entry
102630812         CDS       T02983                                 
Name
(RefSeq) uncharacterized protein LOC102630812 isoform X2
  KO
K12604  CCR4-NOT transcription complex subunit 1
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102630812
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cit03019]
    102630812
Messenger RNA biogenesis [BR:cit03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     102630812
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     102630812
SSDB
Motif
Pfam: Not1 CNOT1_CAF1_bind CNOT1_TTP_bind ARM_Cnot1 DUF3819 CNOT1_HEAT NOT1_connector Phage_H_T_join_2
Other DBs
NCBI-GeneID: 102630812
NCBI-ProteinID: XP_006490845
LinkDB
Position
3:complement(join(51403312..51403461,51403549..51403650,51404216..51404452,51404848..51404982,51405158..51405262,51405338..51405529,51405624..51405777,51406484..51406545,51406618..51406764,51406844..51406891,51406998..51407129,51407278..51407424,51408007..51408090,51408168..51408305,51408384..51408487,51408566..51408692,51409656..51409772,51409899..51409976,51410164..51410208,51410740..51410865,51410942..51411083,51411163..51411395,51411483..51411662,51412136..51412288,51412414..51412509,51413044..51413149,51413240..51413325,51413417..51413557,51413662..51413901,51414007..51414135,51414213..51414260,51414401..51414547,51414634..51414742,51414863..51415008,51415744..51415811,51415911..51415992,51416075..51416269,51416869..51417105,51417183..51417277,51419089..51419192,51419623..51419876,51419964..51420086,51420194..51420331,51420538..51420732,51420820..51421011,51421100..51421228,51421307..51421420,51421521..51421860,51421979..51422207,51422380..51422677,51423522..51423620))
AA seq 2425 aa
MLRLSSTVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGL
KNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLA
LSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQI
LSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMN
ELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCST
MSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQ
EPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQAN
HAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFA
VFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEM
IPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPF
HHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAADSS
TSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEY
RFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALE
QFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVS
SQATSGNGEVSGSGITQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIGQP
SSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRE
TPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNF
HDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIG
RNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLA
EIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQ
LVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGI
SDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMD
RAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCK
EPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEI
AQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVRLPWQN
QSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTT
ESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKVRILEPGA
SSQSLPSTAAPERIGSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVP
EIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVI
YSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESR
VVISELHNLVDALAKLAAKPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDK
KAYSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQ
NGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSI
LKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPV
ADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLL
VNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQM
RNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTG
QPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGN
NSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEA
NQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFES
VARSCGGLKPVDDSMVSGWVPDNTH
NT seq 7278 nt   +upstreamnt  +downstreamnt
atgctcaggctttcgtcaactgttcccagtcagattcggttcttgttgcagagcttgaat
gaagccaacgccgattccgtcttcagagagctctgtcagttcattgaatatggaattgag
ggaagcactatgatgcttcaaacctgcatggatcacttgaatcttcatgggactggcttg
aagaatccacagcttgaatcagttgtagcttcagttttcaaatacattatggacaagcca
aatttcagtactgtgtttagtcagtctgtcaaaattactgagatcaatgaacaactccta
gagaatttatcagatgtgttaaacttatctctacctgaaagaattggcattggtcttgct
ttgtctgattcagaaaatcttgatgcattaatgtgcgggaagaacttttgtatggctcag
attgaaaggttgtgtgccaatcctgttcctatgaattctgccgagcaaattcagaatatt
atcatgttcctccagcgctcaagtgacctttccaagcatgtagattctcttatgcagata
ttatctttgctgcaatcaaaagatcatacccagttcgtcttaaatcctgttcttccagat
gaattgcatgatgctacttctctgagggatttggatttgtttcatgaatgcagagacgat
gattttgatgatattttggcagaaatggagaaggaaatgagtatgggagatgtgatgaat
gaactaggctatggatgctcagctgatgcctcgcaatgcaaagagattctctctcttttc
accccactgacggagattaccctctctcggatacttggcgcgattgctcgtacccatgct
ggacttgaggacaaccagaacacattttcaacctttaccttggcccttggttgcagcacg
atgtctgatctgccacctttgagctcgtggaatgtcgatgttcttgtgaaagctatcaaa
caacttgctcctaatacaaattggataagagtggttgagaacttggattatgagggattc
tacattcctactgaggaggcattttcatttttcatgtctgtatataagtacgcttgccag
gaaccgtttcctctccatgcagtatgtggatctgtttggaagaatactgagggtcagttg
tcttttcttagatatgctgtagcttcaccgccagaagtatttacctttgcccattcagct
aggcagctgccatatgttgatgcagtgcctggccttaagcttcagtctggacaagcaaat
catgcatggctgtgtcttgatcttttagatgtgctctgccaactatctgagatgggtcat
gctagctttgctcgatcaatgcttgagtaccctcttaaacagtgtcctgaaatgttgctt
cttgggatggcacacattaatactgcttataacctgatccaatatgaagtatcttttgct
gttttcccaatgataattaaaagtacaatgagcaatggtatgattcttcacatctggcat
gtgaatcccaatattgtattgcggggattcgttgatgctcagaacatggagcctgactgc
acaataagaatattagagatttgccaggagctgaagatcctatcatcagttctagagatg
attccttctccatttgctatcagattggctgttattgcttcacaaaaagaacttgtggat
cttgagaaatggttaagtattaatttaagtacatacaaggatgttttctttgaggagtgc
ctcaagtttgtaaaggaggttcagtttggtagatcacaggatttttctgcccaacctttc
catcattctggtgctctgttgaatctttatatggagaagattcctgttattctgaagttg
ttaaaagctcatattggtttgattacgtcaaccaagctttctgaggaaattgaaaagttt
caggcagtagtcttggattctactccaaggctgcagaatggtgaggctgcagattcatca
acttctgaaggatacgcagatgacattgaggcggaagcaaactcttacttccatcaaatg
ttttcgggtcagttgaccattgaggcaatggttcaaatgcttgcacgattcaaggaatcc
tctgtgaaaagggaacactcgatttttgagtgcatgattggcaatctatttgaggaatac
aggttcttccccaagtatcctgaaagacagctcagaattgctgctgtcctctttggttcc
ataatcaagcaccagcttgtaactcatctaacacttggcattgccctgcgtggagtttta
gatgcactgcgtaaacctgctgattcaaaaatgtttgtgtttgggaccaaggcgttggag
cagtttgtggaccgtctgattgaatggccgcaatactgcaaccacatcttacaaatttct
catctacgtagtactcatgcagagcttgttgctttcattgaacgggctcttgccaggatt
tcgtcgggccatttggaatcagatggggcaagtaatcctgctgctcatcagcatgtttct
tcgcaggctacctcaggaaatggggaggttagtggctctggcatcacacaattggggcag
caactttcttctcagatacagctccagcagagaagcgaaagtgttgttgatgaccgtcat
aaggtttctgctgcttcatctagtgatatgaaaccacttttgtcgtctattggccaacca
tcatctgttgctcccttaggtgatacttctagtgcacagaagctgcataatgcggtcagt
gctccagcaatgctgtcaatctcttccggttttgctcgtccttcccgaggagttacatct
actaaatttggctctgctttgaacatcgaaacactggttgctgccgcagagagaagagag
actcctatagaggctccagcatcagaggttcaggataagatttcatttataatcaataat
atttcggctctaaatgtagaagccaaagctaaggaattcactgaaatattgaaagagcaa
tattatccctggtttgcgcagtatatggttatgaaaagagcaagcattgagccaaatttt
cacgatttgtacttaaagtttttggataaagttaattcaaaggctttgaatagagagatc
gtccaggccacatatgaaaactgcaaggttctattaggatcagagcttattaaatcaagt
tcagaagagcgttcattgcttaaaaatttgggtagctggcttgggaagttgacaattgga
agaaatcaagttctaagggctcgtgaaatagatcccaaatcactgattatcgaggcatat
gagaagggcttgatgattgctgtcattccatttacttccaagattctggaaccatgccaa
agcagtctagcatatcaacctcccaatccctggactatggccattcttggattacttgct
gagatctattcaatgccaaacctcaaaatgaacctcaaatttgacatagaggttctattc
aagaaccttggtgtggatatgaaggacattacacccacttctcttcttaaggatcggaaa
agggaaattgaagggaatcctgatttttctaataaagatgttggagcatcacaacctcag
ctagttcctgaagttaaaccagcaatagtttctccgttaggtcacgtggatttgccgctt
gatgttgccagcccacctaactctggtggccctacgcatttattgtctcagtatgcggct
cctcttcgtctttcttctggcacattgatggaggatgaaaaactagcagctcttggcatc
tctgatcagcttccttccgcgcaaggcctatttcaagcaagtcaatcccagtcacctttc
tctgttagtcagctttcgacgcctatacctaacattggaactcatgttattatcaaccag
aaacttactgccttgggcttgcacttgcattttcagagagtggttccaattgcaatggac
agggctatcaaagagattgtttctggcattgttcaacgcagtgtttcaatagccactcaa
acaactaaagaacttgttttaaaggactatgccatggaatcagatgagacgcgtatatac
aatgctgcacatttgatggttgcaagtttggcaggaagtctggcccatgtgacatgcaag
gagcccttgcgcggttctatatcaagtcaattgaggaattcgcttcaaggtttaactatt
gcaagtgaactcctggaacaagctgtgcaacttgttaccaatgacaacctcgaccttggt
tgtgcagtgattgagcaggctgctacagataaggctattcaaaccattgatggagaaata
gctcaacaactttctttaagaagaaagcatagagagggcgtaggttcctctttctttgat
ccaaacatttatgcacaaggatctatgggtgtacctgaggccctgcgcccaaaacctggt
cacttatcagtttctcaacagcgagtttatgaggactttgttagacttccttggcagaac
caatctagccagggctcacatgccatgtctgctggttctttgacttcatcgggtgatgct
gctcaagccagtgcttatggtttagcaggaggacaaggtaaccaaggctattcatcaagt
gcaggaagcacaggatttgatgcagtttctcgcccgtcggatgttgcttctggcactact
gaatccacttcagctgggtttctgagtacatcattggtacacattggggctgctgatggt
ggtattctacataattctgaaagtgaatctgtcaacgctgcatttactccagctgctact
gagttatatgcagctgattcaactgaacctgtaaaagtgcgaattcttgaacctggagct
tcttctcagtcactaccatcaactgctgcccctgagcgcattggaagcagcatcttggaa
ccttcgctgcagacaagggatgctctggataaataccacattgttgcacaaaagcttgat
gctttgataggaaatgatgctagagaagctgaggttcagggagtaatttctgaggttcct
gagataatactcagatgcatcagtcgagatgaggctgccttggctgtggctcaaaaggtc
ttcaagggattgtatgagaacgcatcaaacaatcttcattttagcgctcatcttgcgatt
ttggctgccattcgtgatgtttgcaagcttgttgttaaggagctcactagttgggtgatt
tactcagacgaggagagaaagttcaacagagatattactatgggccttattcgtagtgaa
ttactaaaccttgcagagtacaacgttcacatggcaaaacttattgatgggggaaggaac
aaggctgcaaccgagtttgccatttctcttcttcaaactttggtcactgatgagtccaga
gtagtcatttcagaactccacaatcttgtagatgcattagcaaagcttgctgcaaaacct
ggatctcctgagtcattacaacagctgattgagattgttaggaatcctgctgccaatgct
aatgcttcatctggtgctaccactgcaaaggatgataaggctaggcaatccaaggacaaa
aaggcttatagtcacaccacagcaaacagggaagattacaacatcccggagtctgtggat
ccagatcccgttggtttccctgagcaggtatccatgctgtttgcagaatggtatcagata
tgcgaacttcctggctcaaatgatgcagcttgtactcgttatgtcttgcaattacatcaa
aatggtctgcttaaaggggatgatatgacagatcggttcttccgccgcctcacggaagtt
tctgttgcacattgcctatcttcggaggtcattaatcctggtacattgcaatcacctcag
caaagtcagagcctatccttccttgccattgacatttatgcaaaactcatgttatcgatc
ctgaagtgttgtcctgtggagcaagggtcaagtaaaatatttcttttgtcaaagattttg
accgttactgtcaaatttattctaaaagatgcggaagaaaagaaagcttcttttaatcct
aggccgtatttcagattgtttattaactggctgttagacatgagctcactggatcctgtt
gctgatggttcaaactttcagatattgtcggcctttgcaaatgcattccatgttttgcaa
ccccttaaagtacctgccttcagctttgcgtggcttgagttggtcagtcacaggagtttc
atgcctaaattactcattggaaatggtcaaaagggttggccttatatccaacgcttgctt
gtgaatttgcttcaattcttggaaccatttttgaggaatgctgagctgggagtgccggtt
cgctttctgtataaaggcacacttagagtgctgctagtgctgctccatgatttcccagaa
ttcctatgtgattatcattttaccttttgcgatgtgattcccccaagttgcatacaaatg
cgcaatattatcctcagtgcttttcctcgcaatatgaggctgcctgatccatctactccc
aacttaaagattgatctgcttccagaaatcagagacccccctcgtattttttctgaggtt
gatgcggctcttagagcaaagcagatgagagctgatgtggatgattatctcaagacgggc
caaccaggttcctcatttctgagtgaactgaagcagaaattgctccttccacccagtgag
gctgcttctgctggtacccgttacaatgtaccactgatcaattctcttgtgctttatgta
ggaatgcaggccatccatcaactgcaaacaagaacatctcatgcacagtcgacaggaaac
aatagttcgctgactgcattcttggtgagtgctgccttggatattttccagacattgatt
caggatctggataccgaagggcgctatcttttcctaaatgcggctgcgaatcagttgcgc
tatcctaacaaccatacacattatttttcctttgtcttactctatctgtatgctgaagca
aaccaggaaattatccaggagcaaattacaagagtactattcgaacgcctcattgtgaat
cgacctcatccttggggtcttcttataactttcattgaactgatcaagaaccctagatac
aatttctggaaccaatcattcatcaggtgtgctccggagattgagaaactctttgaatca
gtcgcaagatcttgtggaggtctcaagcctgttgatgacagtatggtctctgggtgggtg
cctgacaacactcactga

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