Carettochelys insculpta (pitted-shelled turtle): 142001317
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Entry
142001317 CDS
T11194
Symbol
COL9A2
Name
(RefSeq) collagen alpha-2(IX) chain
KO
K08131
collagen type IX alpha
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz04510
Focal adhesion
ciz04512
ECM-receptor interaction
ciz04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
142001317 (COL9A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
142001317 (COL9A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
142001317 (COL9A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ciz00535
]
142001317 (COL9A2)
Proteoglycans [BR:
ciz00535
]
Extracellular matrix (ECM) proteoglycans
Others
142001317 (COL9A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
142001317
NCBI-ProteinID:
XP_074832502
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Position
24:complement(5043182..5087147)
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AA seq
690 aa
AA seq
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MASSFGSLKLCLLLQVICLCLAQLQGPPGEPGPRGPPGPPGVPGSDGIDGDKGPPGAAGT
LGSKGEPGIPGPDGPPGKPGIDGLTGAKGEPGPRGGPGPKGQPGLPGPPGLPGPGLAGPP
GLPGQVGLPGEIGVLGPKGEPGPDGPRGPPGPPGKPGPPGHIQGLEGSADFLCPTNCPPG
PKGPQGLQGLKGHRGRPGALGEPGRQGRPGPPGDMGISGEQGIPGPPGPQGLRGYPGMAG
PKGETGPRGYKGMVGSIGAAGRPGEEGPKGPPGGAGEKGDIGARGFRGPQGAMGPKGENG
LPGIDGKDGTPGVPGVKGSAGQPGRPGSPGHRGLAGLPGQPGAKGGPGDKGEPGARGLPG
VTGAPGKMGEVGPPGEAGPQGVPGLKGDRGERGPVGPQGLQGKVGSKGEQGPPGIPGPQG
LPGIKGDKGSPGKIGAKGDIGDPGVEGLPGQKGEKGESGEPGPKGQQGVPGEPGFPGPTG
DPGSPGVRGYPGPPGPRGLNGERGVPGMPGQQGVLGRDAGDQHIVDVVLKMLQEQLAELA
VSAKREALGGAGVMGPPGPPGPPGPPGAQGPHGHTGSRGIPGIIGAPGQIGNTGPKGKRG
EKGERGEVGRGHQGMPGPPGIPGLPGIPGHAINGKDGERGSPGVPGEAGRPGLPGPAGLP
GFCEPATCLGASAFTSGRLTEPGTIKGPLY
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggctagttcctttggtagcctaaaactttgccttctcctccaagtcatctgcctgtgc
ctggctcagcttcaaggtcctccaggagagcctgggcctcgggggcccccggggccgcca
ggagttccaggatctgacggcatcgatggtgacaaaggccccccaggtgctgctgggact
ctgggctccaagggggaaccaggcattccaggtccagatgggccccccgggaagccaggc
atcgatggcctgaccggagccaagggggagccagggccacgtgggggcccagggccgaaa
ggccagcctggactgccagggccaccgggactccctggaccaggattggcaggacctcct
gggctgccaggacaagttggactgcctggggagatcggcgtcttgggccctaagggtgaa
cccggacctgatggcccacgaggcccccctgggccccctgggaaacctggccccccagga
cacattcaagggttggaaggcagtgctgatttcttgtgtccaaccaactgcccaccaggg
cccaagggcccccagggactgcagggactcaagggacacagaggccgccccggtgccctt
ggggaacctggcaggcagggcaggccgggccccccgggcgacatgggcatttccggagaa
caaggcatccctggccctccaggtccgcagggcctcagaggttaccctggcatggcggga
ccaaagggtgagacgggtccccgtggctataaaggaatggttgggtccatcggtgctgct
gggaggccgggagaagaaggccctaaggggccacctggtggagctggggagaagggagac
ataggtgctcgtggcttcagaggtccccagggggccatgggccctaaaggggagaacgga
ctgcctggcatcgatggtaaagacggcacccctggcgtccccggcgtgaaggggagcgca
gggcagccgggccgcccagggtcaccgggccaccgaggattagccggcttgccaggccaa
cctggggccaaaggtggcccaggagataagggcgaaccaggtgcccgtggcctgccagga
gtcaccggagcccccgggaaaatgggtgaagttggaccaccaggtgaggcggggccacaa
ggtgtccccgggctgaagggtgatcggggagagaggggtccagtgggtccccaaggcctc
caggggaaagtgggatcaaaaggcgagcagggtcctccagggatcccggggccacagggc
ctgcctggtatcaaaggagacaagggctccccaggaaaaattggagctaaaggtgacatt
ggagaccctggtgtggaaggtcttcccgggcagaagggagagaagggggagtccggcgag
ccaggacccaagggtcagcaaggcgtccctggtgagccgggcttccctggccctactggg
gacccaggatcccctggcgtaagaggttatccaggcccccctggccctcgagggctcaac
ggagagcgtggtgtgcctggaatgcccgggcagcagggtgtgctgggccgggatgctggg
gaccagcacatcgttgacgtggtcttgaagatgctgcaagagcagctggcagagctggca
gtgagtgccaagagagaggcgctaggcggagcaggcgtgatggggccgcctggtccccca
ggccctcctggaccacctggagcacaaggaccgcatgggcacactggatcccgtggcatc
cctggtatcataggagccccagggcagatcggtaataccggacccaaagggaagcgaggg
gagaaaggagaacgtggcgaggttgggcgtggacatcagggtatgccgggaccaccgggt
attccaggtctccccggcattcctggccatgccatcaatggcaaagatggagagcgaggg
tcccctggagtccctggagaagcaggccggcctggtctacctggaccagctggtcttcct
ggattctgcgagccagctacctgcttgggagcctccgcattcacctcagggcgtctgact
gaacccggcaccatcaagggacctttgtactga
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