Carettochelys insculpta (pitted-shelled turtle): 142020633
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Entry
142020633 CDS
T11194
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142020633 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ciz03019
]
142020633 (CNOT1)
Messenger RNA biogenesis [BR:
ciz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
142020633 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
142020633 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
142020633
NCBI-ProteinID:
XP_074864766
LinkDB
All DBs
Position
14:complement(3662217..3750382)
Genome browser
AA seq
2382 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSPDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTEGIPLQSISAPGSGIWSDGKDKSDGTQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQLRDSKGLQIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLVGMASL
SLGGSAVPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTAFSGIGGLSSQLPVGGL
TTGSLSGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHFS
KEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRF
FPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDRF
KNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQAQ
AQAQVPAKASLAGQVSTVVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLVA
TDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSI
EPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGM
ITLAKNKPILHTDLDVKSLLLEAYIKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTMA
IMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPKK
DVKQPEELPPITTTTASTTPATNTTCTASVPPQPQYSYHDINVYSLGGLAPHITLNPTIP
LFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVAA
HHMMRNLTAGMAMITCREPLMMSIATNLKNSFATALRAASPQQREMMEQAAAQLAQDNCE
LACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKV
GGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYDKCMTELEQ
HLQSIPHTLAMNPQAQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADLL
LRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVTMQQ
YDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRGN
APEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVN
LYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYRAQ
AEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVL
IQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGF
VYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKG
TLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDM
LSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQL
INALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQL
RYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPA
FKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGSGAS
NT seq
7149 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggataattta
accaagaaaaattaccgagcaagccagcaggaaatacagcatatagtgaatcggcacggt
cccgaggcagacaggcatttgctacgctgtctattctcccacgtggatttcagtggcgat
ggtaaaagtagcggcaaagatttccatcagactcagtttctgatccaggagtgtgcgtct
ctgattacaaagccaaacttcatctcaacgctgtcctacgccattgacaatccactgcac
tatcagaagagtctaaagccttccccccatttatttgcccagctgagtaaagttatcaaa
ttaagcaaagttcaagaggtgatttttggtcttgctttactgaactccttcagcccagat
ctacgcggttttgctgcccagtttatcaaacagaaacttccagatcttctgcgttcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcacctcctcctctcccatctcctttttgggcagaagggagcctttggggttggacag
gagcagattgacgctttcctcaaaacattacgtagagattttccccaagagcgttgccct
gtggtgcttgcaccacttctataccctgaaaaacgggacatcctaatggataggatcctg
cctgattctggagggatagccaaaacaatgatggagagctctctggcagacttcatgcaa
gaagtaggctacggcttttgtacaagtattgaagaatgtcgcaacataatcatgcagttt
ggcgttcgggaggtcacagctgcccaggttgccagggttttgggaatgatggctcgcact
cattcagggttgacggagggtattccattacaatctatttcggctcctggcagtgggatc
tggagtgatgggaaagataaaagcgatggaacgcaagctcatacctggaatgtggaggtc
ttgattgatgttctaaaagagctgaatcctagtttgaacttcaaggaagtaacctatgaa
ctggatcaccctgggtttcagcttcgtgacagcaagggtcttcagattgtggtgtatggt
atccagagagggctaggcatggaagtcttcccagttgacctcatatacaggccttggaaa
catgctgagggccagctttccttcatccagcattccctcattaacccagagatcttctgt
tttgctgactacccctgtcatactgttgccacagacatcttgaaagccccaccagaggat
gacaatcgagaaattgctacatggaagagcctggatttgattgagtctctgttacggttg
gcagaagttggccagtatgagcaagttaagcagctcttcagtttccctatcaagcactgc
ccagatatgttggtattggccttattacagatcaacacttcctggcataccttgcgccat
gaactcatctctacacttatgccaatttttcttggcaaccaccccaactctgccattatt
ttgcactatgcatggcatggacagggccagtctccttcaatacgtcaacttatcatgcat
gcaatggctgaatggtacatgagaggggagcagtatgaccaggcaaaattgtcacgtatt
cttgacgtggcccaagacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggagcccttcatccaagcctgcatgaccttctta
aagagacgatgcccatctattttgggtggacttgccccagagaaagaccagcccaaaagt
gctcagcttcctccagaaacactagcaactatgttggcctgcctacaggcttgtgctggg
agtgtttctcaggaactgtcggagaccattctcactatggtagccaattgcagtaatgtc
atgaacaaggctagacagccaccacctggagtcatgccaaagggacgtccgccgagtgct
agcagtttggatgccatctctcctgtacagattgacccgcttgttgggatggcatctctt
agtttaggtggttcagctgttccacatacccagagcatgcaaggcttccctccaaatttg
ggttcagcttttagtacacctcagtcaccagcaaaagcatttcctcctctttccacccaa
aatcaaacagctttcagtggcattggaggactttcttcacaacttccagtaggtggtctt
actacgggtagcctaagtggtatagggactggggctcttggcctccctgcagtgaacaac
gatccattcgtgcaaaggaaactgagtacatctggattgaaccagcctacattccagcag
agtaagatgaaaccttctgacttatctcaggtgtggccagaggcaaatcagcactttagt
aaagaaatagatgatgaggcaaatagctactttcaacgcatttataaccatccaccacac
cccaccatgtctgtggatgaggtgttagaaatgctacagaggtttaaggactccaacatt
aagcgggaacgagaagtgtttaactgtatgctgaggaacttgtttgaggaataccgtttt
ttcccccagtatcctgacaaagagctgcatataacagcgtgcctctttggtgggataata
gagaaaggactggttacttacatggcattgggtctggccctgcgctatgttcttgaagcc
ttacgaaagccttttgcatccaaaatgtactattttggtattgctgcactagatagattt
aaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcacttt
atacagttccctcatcacctacaggagtacattgaatatggacagcaatccagagatcct
cctgtgaagatgcagggttcaatcaccacccctggaagtattgcacttgcccaggctcag
gcccaggcccaggttccagcaaaagcatctcttgctggccaagtcagcactgtagtaacc
acctcaaccaccaccactgttgcaaaaaccattacaatcactcggccaactggagtcagc
ttcaagaaggatgtgccgccttccattaatacgaccaacatcgataccttactagtggca
acagatcaaactgagagaattgtggagcccccagaaaatgttcaggaaaaaattgctttc
atattcaataatctgtctcaatcaaatatgacacagaaggttgaggagctgaaggaaact
gtgaaagaagagttcatgccttgggtttcacagtatcttgtgatgaagagagtcagtatt
gagccaaattttcacagcctatattcaaacttccttgacactcttaagaatccagagttt
aacaagatggttctgaatgaaacctacagaaatatcaaggtgctgctgacatcagataaa
gctgcagctaacttctctgatcgttcccttctgaagaacctcggccactggctgggaatg
atcacattggctaaaaataaaccaatcttgcacacggatttggatgtgaaatcattactt
ctggaggcttacattaaggggcaacaggagttgctttatgtagtgccatttgttgccaaa
gtcttagaatctagtgtcaggagtgtggtttttaggcctccaaacccttggacgatggca
atcatgaatgttttagctgagttgcatcaagaacatgacttaaaactaaatctgaaattc
gagatcgaggtgctctgcaagaaccttgcactagacatcaatgagctgaagcctggaaac
ctcctgaaagacaaggatcgattgaaaaatttggatgaacagttgtctgctccaaagaag
gatgtgaaacagccagaggagttaccgcccatcacaacaaccactgcttctacaacccca
gctaccaacaccacttgtacagcatccgttcctccacaacctcagtacagttatcatgac
atcaacgtctactctctgggagggctggctccacacattacgctaaatccaactattccg
ctgttccaggcccacccacagctaaagcagtgtgtacgtcaagctatagaacgtgcggtg
caagagcttgtccatccggtagtagatcggtctattaaaattgccatgaccacctgtgaa
cagatagtcaggaaagacttcgcactggactcagaggagtcacgtatgcgtgtagcagca
caccacatgatgcggaacctgactgctggtatggccatgattacctgccgggaacctctg
atgatgagcattgctaccaacttgaagaacagttttgctactgcactgcgggcagcatcc
ccacagcagagggagatgatggagcaggcagctgcacagttagctcaggataactgtgaa
ttagcatgctgcttcattcagaagacagctgtggaaaaggcaggccctgaaatggacaag
aggttggcaactgaatttgagctcaggaaacatgcgagacaagagggtcgtcgatactgt
gatcctgttgtattaacttaccaggctgaacggatgccagagcagatcagactgaaggtt
ggtggcgtagacccaaagcagttggctgtttatgaagagtttgcacgcaatgtccctggc
ttcttgcctaccaatgatttaacccagcccacaggattcttggctcagccgatgaagcaa
gcttgggctacagatgatgtagcacagatctatgataaatgtatgacagaactggaacaa
catttgcaatccataccccacaccctagccatgaacccacaagctcaagcattacgcagc
ctgttggaggctgtagtagtggctcgtaactcccgtgatgctatagctgcgcttggactg
ctccagaaggctgttgagggcttactggatgccaccagtggtgcagatgctgatctcctg
ctccgctaccgtgagtgtcacctacttgtactgaaagcgctgcaggatggtcgtgcttat
gggtctccatggtgtaacaagcagatcaccagatgtttgattgaatgccgggatgagtat
aagtacaacgtagaagctgtggaactgctcattcgcaatcacctggttactatgcagcag
tatgatcttcatttggcacagtcaatggagaatggcttgaactacatggcagtggcattt
gccatgcagttggtaaagatcttgttggtggatgagaggagcgtagcccatgtaactgag
gcagatctgttccacaccattgagacgctgatgaggattaatgctcattccagagggaat
gctccagaaggattacctcaactgatggaagtggttcgatccaactatgaagcaatgatt
gaccgtgctcacggaggccctaacttcatgatgcattctgggatctcccaagcctctgag
tatgatgatccaccaggcctgagggagaaggcagagtatctactgagggaatgggtgaat
ctctatcactcagctgcagctggccgagacagtaccaaagctttctctgcgtttgttgga
caggtagagcttttggaaagaaagatgcaccagcaaggaatcctgaaaacagatgacctg
ataactcggttctttcgtctttgcactgaaatgtgtgttgaaatcagttatcgtgctcaa
gctgagcagcaacacaatcctgccgccaatcccaccatgatcagagctaagtgttatcac
aacctggatgcctttgtgcggcttattgccctgctagtgaagcactctggggaggccacc
aatactgtcacaaagattaacttactgaacaaggttcttggtatagtggtgggagttctc
atccaggatcacgatgttcggcagagcgagttccagcagctgccttaccatcgcattttc
atcatgttgctgttagaattaaatgctcctgaacatgtgctggagactatcaacttccag
acccttacagccttctgtaacacctttcacatcctgaggcccacgaaagctccaggtttt
gtttatgcctggttggaactgatctcccatcggatctttattgcgagaatgctggcacat
acaccacagcagaagggttggccgatgtatgcccagctgctaatcgatctcttcaagtac
ttggctccttttcttagaaatgtggaactcactaaacctatgcaaattctctacaagggc
actctgcgtgtgctgctggtcttactgcatgattttccagaattcctttgtgactaccac
tatgggttctgtgatgtgatcccacccaactgtatccagctaaggaacctgatcctgagt
gccttcccacgtaacatgaggcttccagatcctttcactcccaacctaaaggtggacatg
ttaagtgagattaacattgcaccgcggatactcaccaactttactggagtgatgccacca
caattcaaaaaagatttggattcctatctcaaaactcgctcccctgtcactttcctgtct
gacttacgcagcaatctacaggtatcaaatgaacctggcaatcgttacaacatccagctg
atcaatgcactggtgctctacgttggcactcaggctattgcacacattcacaacaaaggt
agcacaccctccatgagcactatcacccattcagctcacatggacatcttccagaacttg
gctgtggacttggacacagaaggccggtacctcttcttgaatgcaattgccaatcagctg
cggtaccccaacagccatacacactatttcagttgcaccatgctttacctatttgcagag
gccaataccgaggctatacaggaacagatcactagggtgcttttggagcgactgattgta
aataggcctcacccttggggtcttctgattaccttcattgagctgataaaaaatccagca
tttaagttctggaatcatgagtttgttcactgtgctccggaaattgagaagttgtttcag
tcagttgcacagtgctgtatggggcagaagcaggcacagcaagtgatggaaggaagtggt
gccagttag
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integrated database retrieval system
