Callithrix jacchus (white-tufted-ear marmoset): 100399719
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Entry
100399719 CDS
T03264
Symbol
NXF1
Name
(RefSeq) nuclear RNA export factor 1 isoform X2
KO
K14284
nuclear RNA export factor
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03008
Ribosome biogenesis in eukaryotes
cjc03013
Nucleocytoplasmic transport
cjc03015
mRNA surveillance pathway
cjc05014
Amyotrophic lateral sclerosis
cjc05164
Influenza A
cjc05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100399719 (NXF1)
03015 mRNA surveillance pathway
100399719 (NXF1)
03008 Ribosome biogenesis in eukaryotes
100399719 (NXF1)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
100399719 (NXF1)
05168 Herpes simplex virus 1 infection
100399719 (NXF1)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
100399719 (NXF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjc03019
]
100399719 (NXF1)
03009 Ribosome biogenesis [BR:
cjc03009
]
100399719 (NXF1)
Messenger RNA biogenesis [BR:
cjc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
100399719 (NXF1)
mRNA cycle factors
Stress granule specific factors
100399719 (NXF1)
Ribosome biogenesis [BR:
cjc03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
100399719 (NXF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_8
LRR_4
UBA_8
LRR_9
Motif
Other DBs
NCBI-GeneID:
100399719
NCBI-ProteinID:
XP_002755484
Ensembl:
ENSCJAG00000018635
UniProt:
U3DVC7
LinkDB
All DBs
Position
11:complement(116844153..116860093)
Genome browser
AA seq
619 aa
AA seq
DB search
MADEGKSYSEHDDERVNFPQRRKKGRGPFRWKYGEGNRRSGRGGSSIRSSRLEEDDGDVA
MSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPSERGGAGTSQDGTSKNWF
KITIPYGKKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAINYKIL
DRENRRISIIINSSAPPPTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVA
QNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG
NELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPI
AFDIEPPTTLPPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSI
PFIPQNPARSNLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFV
VDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPATNSGLCIVNDELFVRNAS
SEEIQRAFAMPAPTPSSSPVPTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSA
QAFTHLKAKGEIPEVAFMK
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaggggaagtcgtacagcgagcacgatgatgaacgtgttaatttccctcaa
agaaggaagaaaggccggggtcccttccggtggaaatatggtgaaggaaaccgtaggtct
ggaagaggtggttctagtattcggtcttcccgccttgaggaagatgatggagatgtggca
atgagtgatgcccaagatggtccccgagtacgatacaacccctataccacccggcctaac
cgtcggggcgatacgtggcatgatcgagatcgcattcatgttaccgtgcggagagacaga
gctccttcagagagaggaggagctggcaccagccaggatgggacctcaaagaactggttc
aaaattacaattccttatggcaaaaagtatgacaaagcatggctcctgagcatgattcag
agcaagtgcagtgtgcccttcacccctattgagtttcactatgagaatacacgggcccag
ttctttgttgaggatgccagcactgcctctgcattgaaagctatcaactataagattttg
gatcgggagaatcgaaggatatctatcatcatcaactcctctgctccgcccccgactata
ctgaatgaactgaagccagagcaagtagaacagctaaagctgatcatgagcaaacgatat
gatggctcccaacaagcccttgacctcaagggccttcgttcagacccagatttggtggcc
cagaacattgatgttgtcctgaatcgaagaagctgtatggcagctaccctgagaatcatt
gaagagaacatccctgagctattgtccttgaacttgagcaacaacaggctatacaggctg
gatgacatgtctagcattgtgcagaaggcacccaacctgaagatcctaaacctttctgga
aatgaattgaagtctgagcgggagttggacaagataaagggcctgaagctagaagagctg
tggcttgacggaaactccctgtgtgacaccttcagagaccagtccacctacatcagcgcc
attcgtgaacgatttcccaagttattacgcctggatggccatgagctacccccaccaatt
gcctttgatattgaaccccccacgacgttaccgccctgtaagggaagctattttggaaca
gaaaacttgaagagtctggtcctgcacttccttcagcagtactatgctatttatgactct
ggagaccggcaagggctcctagatgcctaccatgatggggcctgttgttcccttagcatt
cctttcattcctcaaaaccctgcccgaagcaacttggccgagtatttcaaagatagcaga
aatgtgaagaagcttaaagaccctaccttgcggttccggctattgaagcacacgcgtctc
aatgttgtcgccttcctcaacgaattgcccaaaacgcagcacgacgtcaattccttcgtg
gtagacataagcgcccagacaagcacactgctgtgtttttctgtcaatggggtcttcaag
gaagtggatggaaagtctcgggattctttgcgagccttcacccggacattcattgctgtt
cctgctaccaattcagggctgtgtattgtaaacgacgagctatttgtgcggaatgccagt
tctgaagagatccaaagagccttcgctatgcccgcacccacgccttcctccagcccagtg
cccaccctctctccagagcagcaggaaatgttgcaggcattctctacccagtctggcatg
aacctcgagtggtcccagaagtgccttcaggacaacaactgggactacaccagatctgcc
caggccttcacccatctcaaggccaagggcgagatcccagaagtggcattcatgaagtga
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