Callithrix jacchus (white-tufted-ear marmoset): 100403892
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Entry
100403892 CDS
T03264
Symbol
COL9A1
Name
(RefSeq) collagen alpha-1(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04151
PI3K-Akt signaling pathway
cjc04510
Focal adhesion
cjc04512
ECM-receptor interaction
cjc04820
Cytoskeleton in muscle cells
cjc04974
Protein digestion and absorption
cjc05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100403892 (COL9A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100403892 (COL9A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100403892 (COL9A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100403892 (COL9A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100403892 (COL9A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
100403892 (COL9A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cjc00535
]
100403892 (COL9A1)
Proteoglycans [BR:
cjc00535
]
Extracellular matrix (ECM) proteoglycans
Others
100403892 (COL9A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
Toxin_R_bind_N
DUF4882
Motif
Other DBs
NCBI-GeneID:
100403892
NCBI-ProteinID:
XP_002806757
Ensembl:
ENSCJAG00000003767
UniProt:
F6PUA2
LinkDB
All DBs
Position
4:complement(71402625..71490769)
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AA seq
921 aa
AA seq
DB search
MKTCWKFPVFFFVCSFLEPWASAAVKRRPRYPVNSSSNGGDELCPKIRIGQDDLPGFDLI
SQFQVDKAASRRAIQRVVGSTTLQVAYKLGNNVDFRIPTRNLYPSGLPEEYSFLTTFRMT
GSTLRKNWSIWQIQDSSGKEQVGIKINGQTQSVAFSYKGLDGSLQTAAFSNLPSLFDSQW
HKIMIGVERSSATLFVDCNRIESLPIKPRGPIDIDGSAVLGKLADNPQVSVPFELQWMLI
HCDPQRPRRETCHELPARIMPSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGP
PGPPGPAGEPGKPGAPGKPGTPGADGLTGPDGSPGSVGPKGQKGEPGVPGSRGFPGRGIP
GPPGPPGTTGLPGELGRVGPVGDPGRRGPPGPPGPPGPSGTIGFHDGDPLCPNSCPPGRS
GYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGAQGLRGITGIVGDK
GEKGARGLDGEPGPQGIPGASGDQGQRGPPGEVGPKGDRGAQGVRGIPGLPGPKGDTGLA
GVDGRDGIPGMPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGSTGAPGKPGQM
GNSGKPGQQGPPGEVGPRGPRGLPGSRGEMGPVGSPGLPGKLGSLGSPGLPGLPGPPGLP
GMKGDRGIVGEPGPKGEQGASGEEGEAGKRGELGDIGLPGPKGSAGNPGEPGLRGPEGSR
GLPGVEGPRGPPGPRGVQGEQGATGLPGVQGPPGRAPTDHHIKQVCMRVIQEHFAEMAAS
LKRPDSGASGFPGRPGPPGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGEK
GERGPAGRGPKGLPGAIGLPGDPGPASYGRNGHDGERGPPGVAGIPGVPGPPGPPGLPGF
CEPASCTMQAGQRAFSKGPDQ
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgaagacctgctggaaatttccagttttcttctttgtgtgcagtttcctggaaccctgg
gcatctgcagctgtcaagcgtcgccccagataccctgtcaattccagttctaatggtggt
gatgaactctgcccaaagatcaggattggccaagatgacttaccagggtttgatctgatc
tctcagttccaggtagataaagcagcatctagaagagctatccaaagagtagtgggatca
actacattacaggtggcttacaaattgggaaacaatgtagacttcaggattccaactagg
aatttatatcccagtggactgcctgaagaatattccttcttgacgacatttcggatgact
ggaagcacactcagaaagaactggagcatttggcagattcaggattcctctgggaaggag
caagttggcataaagattaatggccagacacaatctgttgcattttcatacaagggactg
gatggaagtctccaaacagcagccttttcgaatttgccctccttgtttgattcccagtgg
cataagatcatgattggcgtggagaggagtagtgctactctttttgttgactgcaacagg
attgaatctttacctataaagccaagaggcccgattgacattgacggctctgctgtgctg
ggtaaacttgcagataatcctcaagtttctgttccatttgaacttcaatggatgctgatc
cattgtgacccccagcggcctaggagagaaacttgccatgagctgccagccagaataatg
cccagccagaccactgacgagagaggtcccccgggcgagcagggtcctccggggcctccg
ggcccccctggagttcccggcatcgatggcatcgacggtgaccgaggtcctaagggtccc
ccgggcccaccgggtcctgcaggtgaaccgggaaagccaggagcgccaggcaagcccggc
acacccggcgctgatggattaacaggacctgatggatcccctggctctgttggaccaaag
ggacaaaaaggagaacctggtgtgcctggctctcgtggatttccaggccgtggtattcct
ggaccccctggtcctcctgggacaacaggactccctggagagcttggccgtgtaggacct
gttggtgaccctgggagaagaggaccacctggaccccctggacccccaggacccagtgga
acaattggctttcatgatggagatccgctgtgtcccaattcctgtccaccaggtcgctca
ggatatccaggcctaccaggcatgaggggtcataaaggggctaaaggagaaattggtgaa
ccaggaagacaaggacacaagggtgaagaaggtgaccagggagaactgggagaagtcgga
gctcaaggacctccaggagcccagggtttgcgaggcatcactggcatagttggggacaaa
ggggaaaaaggtgctcggggcttagatggtgaacctgggcctcagggtattcctggtgca
tctggtgaccaaggacaacgaggacctccaggagaagtaggtcccaaaggagataggggg
gctcaaggtgttagaggaattcctggtctccctgggcccaaaggagacacgggcttggct
ggtgtggatggccgtgatgggatccctggaatgcctggaacaaagggtgaaccaggaaaa
cctgggcctcccggcgatgcaggattgcaggggttaccaggtgtacctggaattcctggt
gcaaagggtgttgctggtgaaaagggtagcacaggtgctccagggaagcctggtcagatg
ggaaattcaggcaaaccgggccaacaagggcctccaggagaggtgggaccccgaggaccc
cggggacttcctggcagtagaggagaaatgggaccagtgggatcgccagggctaccaggt
aaactgggttctctgggtagccctggcctccctggcttgcctgggccccctggacttcct
ggaatgaaaggtgacaggggaatagtcggtgaaccaggtccaaaaggtgaacagggtgcc
tctggtgaagaaggtgaagcaggaaaaaggggagaacttggagatataggattacctggc
ccaaagggatctgcaggtaatcctggggagcctggcttgagagggcctgaaggaagtcgg
gggcttcctggagtggaaggaccaagaggaccccctggaccccggggtgtgcagggagaa
cagggtgccaccggccttcctggtgtccagggccctccgggtagagcaccgacagatcat
cacattaagcaggtttgcatgagagtcatacaagagcattttgctgagatggctgctagt
ctcaagcgtccagactcaggtgcctcggggtttcctggaaggcctggccctcctggtcct
cctggccctcctggagagaatggtttcccaggccagatgggaattcgtggccttcccggc
attaaagggcccccgggtgctcttggtttgaggggacctaaaggtgacttgggagaaaag
ggggagcgtggccctgcaggaagaggtcccaaaggtttgcctggagctataggtctccca
ggtgacccaggccctgccagctatggaagaaatggccacgatggtgagcgaggccccccg
ggggtggcaggaattcctggtgtgcctggacccccaggacctcctgggcttcctggtttc
tgtgagccagcctcctgcaccatgcaggctggtcagcgagcatttagcaaagggcctgac
cagtga
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