Callithrix jacchus (white-tufted-ear marmoset): 100406902
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Entry
100406902 CDS
T03264
Symbol
MSH3
Name
(RefSeq) DNA mismatch repair protein Msh3 isoform X1
KO
K08736
DNA mismatch repair protein MSH3
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc01524
Platinum drug resistance
cjc03430
Mismatch repair
cjc05200
Pathways in cancer
cjc05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
100406902 (MSH3)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100406902 (MSH3)
09162 Cancer: specific types
05210 Colorectal cancer
100406902 (MSH3)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
100406902 (MSH3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cjc03400
]
100406902 (MSH3)
DNA repair and recombination proteins [BR:
cjc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
100406902 (MSH3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
Motif
Other DBs
NCBI-GeneID:
100406902
NCBI-ProteinID:
XP_054108588
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Position
2:complement(126859169..127286562)
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AA seq
1162 aa
AA seq
DB search
MTAAVSTDPASYTTTRGQLWRGIIRPPFRPYLCRRGPASRPGARQGRDALAPADAWELRP
RARAPGRALPPGLPSLPCHVSPEACVGRPRCLQLSPCKASGFEPIFPVYGKSEIHRLLRG
CNRPGGPRRRSAPSVHFPAPAAAAREPKKCLRTRNVLKSLEKLKEFCCDSAPPQNRVQTE
SLPERFAVLPKCTDFDDISLLRAKNAVSSKDSKCQINPKDTTLFDISHFGSSNRSDENLQ
KTDSKPANKRSKSIYTPLELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYC
HLDHNFMTASIPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAVGDNRSSLFSRKLTALY
TKSTLIGEDVNPLIKLDDAVNVDAIMTDTSTSYLLCISENNENVRDKKKGNVFIGIVGVQ
PATGEVVFDSFQDSASRSELETRMSSLQPVELLLPLALSKQTEMLIHRATSVSVRDDRIR
VERMDDTYFEYSHAFQAVTEFYAKDTVDFKGSKIISGIINLEKPVICSLAAIIKYLKEFN
LEKMLSKPENFKQLSSKMEFMTINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRR
KLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIENHLHKLPDVERGLCSIYHKKCS
TQEFFLIVKTLYHLKSEFQAIIPAVNSHVQSDLLRTIILEIPELLGPVEHYLKILNEQAA
KVGDKTELFKDLSDFPLIKKRKDEIQGVSDKIRIHLQEIRKILKNPSAQYVTVSGQEFMI
EIKNSAVSCIPTDWVKVGSTKAVSRFHSPFIVENYRHLNQLREQLVLDCSAEWLDFLEKF
SEHYHSLCKAVHHLATIDCIFSLAKVAKQGEYCRPTVQEERKILIKNGRHPVIDVLLGEQ
DQYVPNSTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDG
IFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATL
EYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDESRLPPGEEQVPDFVTF
LYQITRGIAERSYGLNVAKLADVPGEILKKAAHKSKELEGLINTKRKRLKYFAKLWTMHN
AQDLQKWTEELEMEETQTSLPH
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgacagcagcagtgagcactgaccccgctagctacaccaccacgcgcggccaactttgg
cgcggaatcatccgcccgccttttcgtccttatttgtgcagacgaggccccgcctcccgc
cccggcgcacggcagggtcgcgacgcgctcgcgcccgcagacgcctgggaactgaggccg
cgggctcgcgctcccggccgtgccctgcctccggggctgccatccctgccctgccatgtc
tcgccggaagcctgcgtcgggcggcctcgctgcctccagctcagcccctgcaaggcaagc
ggttttgagccgatttttccagtctacgggaagtctgaaatccaccgcctcctccgcggg
tgcaaccgaccaggtggaccccgacgccgcagcgcccccagcgtccactttcccgcccca
gctgccgccgcacgtgagccaaagaaatgtctgaggacgaggaatgttttaaagtctctg
gaaaaattgaaagaattctgctgcgattctgcccctcctcaaaatagagtccagacagaa
tctctgccggagagatttgcagttctgcccaaatgtactgattttgatgatataagtctt
ctacgtgcaaagaatgcggtttcttctaaagattcgaaatgtcaaattaatccaaaggac
acaacactttttgatatcagtcattttggatcatcaaatagaagtgatgaaaatttacag
aaaactgattctaaaccagctaacaaacggtccaaaagcatctatacaccactagaatta
caatacatagaaatgaagcagcagcacaaagatgcagttttgtgtgtggaatgtggatat
aagtatagattctttggggaagatgcagagattgcagcccgggagctcaatatttattgc
catttggatcacaactttatgacagcaagtatacctactcacagactgtttgttcacgtg
cgccgcctggtggcaaaaggatataaggtgggcgttgtgaagcaaactgaaactgcagca
ttaaaggccgttggagacaacagaagttcactcttttctcggaaattgactgccctttat
acaaaatctaccctcattggagaagatgtgaatcccctaatcaagctggatgatgctgta
aatgttgacgcgataatgaccgatacgtctaccagctatcttctgtgcatctctgaaaat
aacgaaaatgttagggacaaaaaaaaggggaacgtttttattggcattgtgggagtgcag
cctgccacaggcgaggttgtgtttgatagtttccaggactctgcttctcgttcagagcta
gaaacccggatgtcaagcctacagccggtagagctgctgcttccattggccttgtccaag
caaacagagatgctcatccacagagccacatctgttagtgtgcgagatgacagaattcga
gttgaaaggatggatgacacttattttgaatacagccatgctttccaggcagttacagag
ttttatgcaaaagatacagttgacttcaaaggttctaaaattatttctggcatcattaac
ttagagaagcctgtgatttgctctttggctgccatcataaaatacctcaaagaattcaac
ttggagaagatgctctccaaacctgagaattttaaacagttgtcaagtaaaatggaattt
atgacaattaatggaacaacattaaggaatctggaaattctacagaatcagactgatatg
aaaaccaaaggaagtttgctttgggttttagaccacactaaaacttcatttgggagacgg
aagttaaagaagtgggtgacccagccactccttaaattaagggaaataaatgcccgactt
gatgctgtatctgaagttcttcattcagaatctagcgtgtttggtcagatagaaaatcat
ctacataaattgcccgacgtagagagaggactctgtagcatttatcacaaaaagtgttct
acccaagagttcttcttgattgtcaaaaccttgtatcacttaaagtcagaatttcaagca
ataatacctgctgttaattcccacgttcagtcagacttgctccggaccattattttagaa
attcctgaactcctcggtccagtagagcattacctaaagatactcaatgaacaagctgcc
aaagttggagataaaactgaattatttaaagacctttctgactttcctttaataaaaaag
aggaaggatgaaattcaaggtgttagtgacaagatccgaatacatttgcaagaaataaga
aaaatactaaaaaatccttctgcgcaatatgtgacagtatcaggacaggagtttatgatc
gaaataaagaactctgctgtatcttgtataccaactgattgggtaaaggttggaagcaca
aaagctgtgagccgttttcactctccttttattgtagaaaattacagacatctgaatcag
ctccgggagcagctagtccttgactgcagtgctgaatggcttgattttctagagaaattc
agtgaacattatcactccttgtgtaaagcagtgcatcacctagcaactattgactgcatt
ttctccctggccaaggtcgctaagcaaggagagtactgcagaccaactgtacaagaagaa
agaaaaatcttaataaaaaatggaaggcaccctgtgattgatgtgttgctgggagaacag
gatcaatatgttcccaatagtacagatttatcagaggactcagaaagagtaatgataatt
actggaccaaacatgggtggaaagagctcctacataaaacaagttgcgttaattaccatc
atggctcagattggctcctatgttcctgcagaagaagcaacaattgggattgtggatggc
attttcacgaggatgggtgctgcagacaatatatataaaggacggagtacatttatggaa
gaactgactgacacagcagaaataatcagaaaagcaacatcacagtccttggttatcttg
gatgaattaggaagagggacgagcacccatgatggaattgctattgcctatgctacactt
gagtatttcatcagagatgtgaaatccttaaccctgtttgtcacccattatccgccagtt
tgtgaactagaaaaaaattactcacaccaggtggggaattaccacatgggcttcttggtc
agtgaggatgaaagcagactgcctccaggtgaagaacaagtccctgattttgtcactttc
ctttatcaaataactagaggaattgcagaaaggagttatggattaaatgtggctaaacta
gcagatgttcctggagaaattttgaagaaagcagctcacaagtcaaaagagctggaagga
ttaataaatacaaaaaggaagagactaaagtattttgcaaagttatggacaatgcataat
gcacaagacctgcagaagtggacagaggagttggaaatggaagaaacacagacttctctt
cctcattaa
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