Callithrix jacchus (white-tufted-ear marmoset): 100412980
Help
Entry
100412980 CDS
T03264
Symbol
CHD4
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 4 isoform X1
KO
K11643
chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03082
ATP-dependent chromatin remodeling
cjc05165
Human papillomavirus infection
cjc05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100412980 (CHD4)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
100412980 (CHD4)
09172 Infectious disease: viral
05165 Human papillomavirus infection
100412980 (CHD4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cjc03036
]
100412980 (CHD4)
Chromosome and associated proteins [BR:
cjc03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
100412980 (CHD4)
Chromatin remodeling factors
NuRD complex
100412980 (CHD4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
ResIII
HDA2-3
PHD_2
DEAD
zf-PHD-like
Motif
Other DBs
NCBI-GeneID:
100412980
NCBI-ProteinID:
XP_035111433
Ensembl:
ENSCJAG00000008114
LinkDB
All DBs
Position
9:complement(18852359..18889370)
Genome browser
AA seq
1940 aa
AA seq
DB search
MASGLGSPSPCSAGSEEEDMDALLNNSLPPPHPENEEDPEEDLSETETPKLKKKKKPKKP
RDPKIPKSKRQKKERMLLCRQLGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKL
GPKKEKKSKSKRKEEEEEDDDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKA
FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGASVAAAAAAAVAVVESM
VTATEVAPPPPPVEVPIRKAKTKEGKGPNARRKPKGSPRVPDAKKPKPKKVAPLKIKLGG
FGSKRKRSSSEDDDLDVESDFDDASINSYSVSDGSTSRSSRSRKKLRTTKKKKKGEEEVT
AVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGIQ
WEAKEDNSEGEEILEEVGGDLEEEDDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPL
PEIPNGEWLCPRCTCPALKGKVQKILIWKWGQPPSPTPVPRPPDADPSTPSPKPLEGRPE
RQFFVKWQGMSYWHCSWVSELQLELHCQVMFRNYQRKNDMDEPPSGDFGGDEEKSRKRKN
KDPKFAEMEERFYRYGIKPEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVE
IQDYDLFKQSYWNHRELMRGEEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLD
ATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLV
SAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKE
ASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLL
TGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDMLGPHMLRRLKA
DVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCN
HPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLD
LLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADT
VIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVR
PGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGDNKEGEDSSVIHYDDKAIERLLDR
NQDETEDTELQGMNEYLSSFKVAQYVVREEEMGEEEEVEREIIKQEESVDPDYWEKLLRH
HYEQQQEDLARNLGKGKRIRKQVNYNDGSQEDRGVCGRPRPPPMGRSTRAVGPAHLPSLP
PDWQDDQSDNQSDYSVASEEGDEDFDERSEAPRRPSRKGLRNDKDKPLPPLLARVGGNIE
VLGFNARQRKAFLNAIMRYGMPPQDAFTTQWLVRDLRGKSEKEFKAYVSLFMRHLCEPGA
DGAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHVNGRWSMPELAEVEENKKMSQ
PGSPSPKTPTPSTPGDTQPNTPAPAPPAEDGIKIEENSLKEEESIEGEKEVKPAAPETAI
ECTQPPAPASEDEKVVVEPPEGEEKVEKAEVKERTEEPMETEPKGVADVEKVEEKSAIDL
TPIVVEDKEEKKEEEEKKEVMLQNGETPKDLNDEKQKKNIKQRFMFNIADGGFTELHSLW
QNEERAATVTKKTYEIWHRRHDYWLLAGIINHGYARWQDIQNDPRYAILNEPFKGEMNRG
NFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNMSEDPSHPSMALNTRFAEVECLAESH
QHLSKESMAGNKPANAVLHKVLKQLEELLSDMKADVTRLPATIARIPPVAVRLQMSERNI
LSRLANRAPEPTPQQVAQQQ
NT seq
5823 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgggcctgggctccccgtccccctgctcggcgggcagtgaggaggaggatatg
gatgcacttttgaacaacagcctgcccccaccccacccagaaaatgaagaggacccagaa
gaggatttgtcagaaacagagactccaaagctcaagaagaagaaaaagcctaagaaacct
cgggaccctaaaatccctaagagcaagcgccaaaaaaaggagcgtatgctcttatgccgg
cagctgggggacagctctggggaggggccagagtttgtggaggaggaggaagaggtggct
ctgcgctcagacagtgagggtagcgactatacccctggtaagaagaagaaaaagaagctt
ggacctaagaaagagaagaagagcaaatccaagcggaaggaggaggaggaggaggatgac
gacgacgatgattcaaaggagcctaaatcatctgctcagctcctggaagactggggcatg
gaagacattgaccacgtgttctcagaggaggactatcgaaccctcaccaactacaaggcc
ttcagccagtttgtcagacccctcattgctgccaaaaatcccaagattgctgtctccaag
atgatgatggttttgggtgcaaaatggcgggagttcagtaccaataatcccttcaaaggc
agttctggggcatcagtggcagcagcagcagcagcagcggtggctgtggtggagagcatg
gtgacagccactgaggttgcaccaccacctccccctgtggaggtccctatccgcaaggcc
aagaccaaggagggcaaaggtcccaatgctcggaggaagcccaagggcagccctcgtgta
cctgatgccaagaagcctaaacccaagaaagtagctcccctgaaaatcaagttgggaggt
tttggttccaagcgtaagagatcctcgagtgaggatgatgacttagatgtggaatcagac
ttcgatgatgccagtatcaatagctattctgtttctgatggttccaccagccgtagtagc
cgcagccgaaagaaactacgaactacaaagaagaaaaagaaaggcgaggaggaggtgact
gctgtggatggttatgagacagaccaccaggactattgcgaggtgtgccagcaaggcggt
gagatcatcctgtgtgatacctgtccccgagcttaccacatggtctgcctggatcctgac
atggagaaggctcccgagggcaagtggagctgcccacactgcgagaaggaaggcatccag
tgggaggctaaagaagacaattcagagggtgaggagatcctagaagaggttgggggagac
cttgaagaggaggatgaccaccatatggaattctgtcgggtctgcaaggatggtggggag
ctgctttgctgtgacacctgtccttcatcctaccacatccactgcctgaatcccccactt
ccagagatccccaacggtgaatggctgtgtccccgttgtacgtgtccagctcttaagggc
aaagtgcagaagatccttatctggaagtggggtcagccaccgtctcccacaccagtacct
cggcctccagatgctgatcccagtacaccctccccaaagcccttggaggggcggccagag
cggcagttctttgtgaaatggcaaggcatgtcttactggcactgctcctgggtgtctgaa
ctgcagctggagctgcactgtcaggtgatgttccgaaactatcagcggaagaatgatatg
gatgagccaccttctggggactttggtggtgatgaagaaaagagccgaaagcggaagaac
aaggatcctaaatttgcagagatggaagaacgcttctatcgctatgggataaaacctgag
tggatgatgatccaccgaattcttaaccacagtgtggataagaagggccatgtccactac
ttgatcaagtggcgggacttaccttacgatcaggcttcttgggagagtgaggatgtggag
atccaggattatgacctgttcaagcagagctattggaatcacagggagttaatgaggggt
gaggaaggccgaccaggcaagaaactcaagaaggtaaagctgcgaaagttggagaggcct
ccggaaacgccaacggttgatccaactgtgaagtatgagcgacagccagagtatttggat
gctacaggtggaactctgcacccgtatcaaatggagggcctgaattggttgcgcttctcc
tgggctcagggcactgacaccatcttggctgatgagatgggccttgggaaaactgtacag
acagcagtcttcctctactccctttacaaggagggtcattccaaaggccccttcctagtg
agtgcccctctttctaccatcatcaactgggagcgggagtttgaaatgtgggctccagac
atgtatgtcgtaacctatgtgggtgacaaggacagccgtgccatcatccgagagaatgag
ttctcttttgaagacaatgccattcgtggtggcaagaaggcctcccgcatgaagaaagag
gcatctgtgaaattccatgtgctgctgacatcctatgaattaatcaccattgacatggct
atcttgggctctattgattgggcctgcctcatcgtggatgaagcccatcggctgaagaac
aatcagtctaagttcttccgggtcttgaatggttactcactccagcataagctgttgctg
actgggactccattacaaaacaatctggaagagttgtttcatctgctcaactttctcacc
cctgagaggttccacaatttggaaggttttttggaggagtttgctgacattgccaaggaa
gaccagataaaaaaactgcatgacatgctggggccgcacatgttacggcggctcaaagct
gatgtgttcaagaatatgccatccaagacggaactaattgtgcgtgtggagctaagccct
atgcagaagaaatactacaagtacatcctcactcggaattttgaagcactcaatgcccga
ggtggtggcaaccaggtgtctctgctaaatgtggtgatggatcttaagaagtgctgcaac
catccgtacctcttccctgtggctgcgatggaagccccaaagatgcctaatggcatgtat
gatggtagtgccctaatcagagcatctgggaaattattgctgctgcagaaaatgctcaag
aaccttaaggagggtggacatcgtgtactcatcttttcccagatgaccaagatgctagac
ctgctagaggatttcttggaacacgaaggttataaatatgaacgcattgatggtggaatc
actgggaacatgcggcaggaggccattgaccgcttcaatgcaccgggtgctcagcagttc
tgcttcttgctttccactcgagctgggggccttggaatcaatctggccactgctgacaca
gttattatctatgactctgactggaacccccataatgacattcaggcctttagcagagct
caccggattgggcaaaataaaaaggtaatgatctaccggtttgtgacccgtgcgtcagtg
gaggagcgcatcacacaagtggcaaagaagaaaatgatgctgacgcatctagtggtgcgg
cctgggctgggctccaagactggatctatgtccaaacaggagcttgatgatatcctcaaa
tttggcactgaggaactattcaaggatgaagccactgatggaggaggagacaacaaagag
ggagaagatagcagtgttatccactatgatgataaggccattgaacggctgctggaccgt
aaccaagatgagactgaagacacggaattgcagggcatgaatgaatatttgagctcattc
aaagtggcccagtatgtggtacgggaagaagaaatgggggaggaagaggaggtagaacgg
gaaatcattaaacaggaagaaagtgtggatcctgactactgggagaaattgctgcggcac
cattatgagcagcagcaagaagatctagcccgaaatctgggcaaaggaaaaagaatccgt
aaacaggtcaactacaatgatggctcccaggaggaccgaggtgtgtgtggccggccccgc
cccccacccatgggccgttccactagagcagtgggccccgctcatctgccctctctccct
ccagattggcaggacgaccagtccgacaaccagtccgattactcagtggcctcagaggaa
ggtgatgaagactttgatgaacgttcagaagctccccgtaggcccagtcgtaagggcctg
cggaatgataaagataagccattgcctcctctgttggcccgtgttggtgggaatattgaa
gtacttggttttaatgctcgtcagcgaaaagcctttcttaatgcaattatgcgatatggt
atgccacctcaggatgcttttactacccagtggcttgtaagagatctgcgaggcaaatca
gagaaagagttcaaggcatatgtctctctttttatgcggcatttatgtgagcctggggca
gatggggctgagacttttgctgatggtgtaccccgagaaggcctgtctcgccagcatgtc
cttactagaattggtgttatgtctttgattcgcaagaaggttcaggaatttgaacatgtt
aatgggcgctggagcatgcctgaactggctgaagtagaggaaaacaagaaaatgtctcag
ccagggtcaccctccccaaagactcctacaccctccactccgggcgacacgcagcccaac
actcctgcacctgccccacctgctgaagatgggataaaaatagaggaaaatagcctcaaa
gaagaagagagcatagaaggagaaaaggaggttaaacctgcagctcctgagactgccatt
gagtgtacacagccccccgcccctgcctcagaggatgaaaaggtcgttgttgaaccccct
gagggggaggagaaagtggaaaaggcagaggtgaaggagagaacagaggaacctatggag
acagagcccaaaggtgttgctgatgtagagaaggtggaggagaagtcagcaatagatctg
acccctattgtagtagaagacaaagaagagaagaaagaagaagaagagaaaaaagaggtg
atgcttcagaatggagagacccccaaggatctgaatgatgagaaacagaagaaaaatatt
aaacagcgtttcatgttcaacattgcagatggtggttttactgagttgcactccctttgg
cagaatgaagaacgggcagccacagttaccaagaagacttatgagatctggcatcgacgg
cacgactactggctgctagctggtatcataaaccatggctatgcccggtggcaggacatc
cagaatgacccacgctatgccatcctcaatgagcctttcaagggtgaaatgaaccgtggc
aatttcttagagatcaagaataaattcctagctcgaaggttcaagctcttagaacaggct
ctggtgattgaggaacagctgcgccgggctgcttacttgaacatgtcagaagacccttct
cacccttccatggccctcaacacccgctttgctgaggtggagtgtttggcggaaagtcat
cagcacctgtccaaggagtcaatggcaggaaacaagccagccaatgcagtcctgcacaaa
gttctgaaacagttggaagaactgctgagtgacatgaaagccgatgtgactcgactccca
gctaccattgcccgaattcccccagttgctgtgaggttacagatgtcagagcgtaacatt
ctcagccgcctggcaaaccgggcacccgagcctaccccacagcaggtagcccagcagcag
tga
DBGET
integrated database retrieval system
