Cryptomeria japonica (Japanese cedar): 131040347
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Entry
131040347 CDS
T10556
Name
(RefSeq) probable pectate lyase 5 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf00040
Pentose and glucuronate interconversions
cjf01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
131040347
Enzymes [BR:
cjf01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
131040347
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Kre28
Motif
Other DBs
NCBI-GeneID:
131040347
NCBI-ProteinID:
XP_057829229
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All DBs
Position
1:70916193..70920129
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AA seq
492 aa
AA seq
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MRMQRMRQLSCCIVVIGVLCIQIVIPKCSAAKTFGFFNNLLGFSGSRSPKQMQHHHTRNK
SSSIDDPERVVEMVQRSINDSRRQLSYVNCGTGNPIDDCWRCNPNWQMDRQRLADCAIGF
GRGALGGKNGEYYLVTDSSDNDPVNPTPGTLRHAVIQTEPLWIIFQSDMLIQLKEELIMN
SYKTIDGRGANVHIAHGPCITVQYITNIIIHGVHIHDCIPAGNAMVRDSPVHYGYRGICD
GDGISIFSSSFIWIDHCELYNCADGLIDAIMGSTAITISNNYFHHHNEVMLLGHSDSFTG
DKIMQVTIAFNHFGEDLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAKPTINSEGNRYL
APSDPNAKQITKRLDAEDSEWMYWNWRTEGDLLLNGAFFVPSGAGAADSYMLASSLGAKP
AFLVGTLTGDAGVLRDGVKTGSGSNDSGSGSTGLEGSSGGRVTVSGAEALSPLDRIIYYI
TVFVCLCLVLRL
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgagaatgcaaaggatgaggcagttatcctgctgcattgtagtgattggagttctgtgc
atccaaatcgtcataccaaaatgttctgcagccaagacatttggatttttcaacaatttg
ctgggattttcgggaagtagatcccctaaacaaatgcagcatcaccatacgcggaacaaa
tcttcttcaatagatgatccagaaagagttgttgagatggttcaaaggagcattaacgac
tcacggcgacagctgagctacgtgaactgtggaaccggaaatccaatcgacgattgctgg
cggtgtaaccctaactggcaaatggaccggcagagactggcagactgtgccattggcttc
ggccgcggcgccctcggaggaaagaacggcgaatactacctcgttaccgattcaagcgac
aacgatccagtgaatcccacgccgggcacccttcgccacgccgtcattcaaacagagccc
ctctggatcatattccagagcgacatgctcattcagctcaaggaagagctcatcatgaac
agctacaagacaatcgatggccggggggcaaatgttcacatagctcacggcccctgcatc
actgtccagtatataacgaatataatcatccacggcgttcatattcacgactgtataccg
gcgggaaacgccatggtgagggactcccctgttcattacggttacaggggcatatgtgac
ggggacggcatttccattttcagctcgagtttcatctggatcgaccactgcgagctctac
aattgcgcggacggcctaatcgacgccatcatgggttctactgctattaccatctccaac
aactacttccatcaccataatgaggtgatgcttcttggtcacagcgacagctttactggc
gacaagataatgcaggtcaccatagcattcaaccatttcggcgaagatcttgtccaaagg
atgcctcgatgtcgtcatggatacttccatgtggtaaacaacgattacacgcactgggaa
atgtacgccattggcggaagcgcgaagccgactataaacagcgaaggcaatcgatacttg
gctccttcagatcccaatgcaaagcagataaccaagcggcttgatgcagaggacagtgag
tggatgtactggaactggcgaacggaaggagacctactgttaaatggcgcgttttttgtc
ccgtcaggcgcaggggcagctgacagctatatgttggcctctagcctcggagcaaagccc
gcttttctggtcggaaccttaactggggacgccggtgttcttcgggacggggtgaaaact
ggaagcggaagtaacgacagtggaagcggcagtacgggattagagggcagttcggggggg
cgcgtaacagtgtcaggcgcagaggccttgtcgccattggatcgtataatatactatatt
acagtcttcgtatgcctctgccttgtattgagactatag
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