Cryptomeria japonica (Japanese cedar): 131057874
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Entry
131057874 CDS
T10556
Name
(RefSeq) DNA-directed RNA polymerase subunit beta-like
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
131057874
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjf03021
]
131057874
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131057874
Enzymes [BR:
cjf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
131057874
Transcription machinery [BR:
cjf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
131057874
DNA repair and recombination proteins [BR:
cjf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
131057874
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
CLP_protease
RNA_pol_Rpb2_7
RnfC_N
Motif
Other DBs
NCBI-GeneID:
131057874
NCBI-ProteinID:
XP_057847993
LinkDB
All DBs
Position
1:complement(682294524..682296633)
Genome browser
AA seq
687 aa
AA seq
DB search
MVQGVAVYDTMQYVTGDVFTIGVGLNASMGAFLLHGGTFTKRVMTQNTSIMIHQPHMSPY
DRRATSIESSFDSEYLGLLRSYVARTYLRRTKQDFELICYLLERDIYMTPDQAVEFGLID
EIGVEGLGFSDTLDTLFIHDDADAHDNSFANRALMGSNMQRQAVPLVQPEKCIVGTGLEG
QAALDSGSVAIAKQGGKIKYIDGENITITSSVARNNIETELILYQRSNSDTCMHQKPRVR
QGEYVKRGQIIADSAATAGGELSLGKNILVAYMPWEGYNFEDAILISERLVYQDIFTSFQ
IVRYEIGVYFTNQGPEVITREIPHLDAYLLRHLDENGLVMIGSWIETGDVLVGKLILEAE
EDSLLNTPEGKLLQALFDIKAPTGKENCFRVPKGVKGRVIDVRCFQEFEEDDYLGDIVEK
VHVYILQKRKIQVGDKVAGRHGNKGIISKILPRQDMPYLQNGTPVDMVLNPLGVPSRMNV
GQIFECLLGLAGKLMNKHYRLAPFDERYEREASRKLVFSELYKASEQTANPWVFEPDHPG
KHRLIDGRTGKVFEQPVTIGIAYISKLCHQVDDKIHARSSGPYTLVTQQPLKGKSHRGGQ
RVGEMEVWALQGFGVAYILHEMLTLKSDHMDTREKIFGAIFNGEPMPKPSTPTESFRLLS
RELRSLALELNHTILSEIDFQIDKKEV
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggtacagggagtcgctgtttacgatactatgcaatacgtaacaggggatgtatttaca
ataggcgtcgggttaaatgcttcaatgggagctttccttctacacggggggacgtttact
aaacgggtaatgacccaaaacacatcaattatgatccaccaaccccatatgtctccttat
gatcgtcgcgccacttcaatagaatcaagcttcgattcagagtatctgggccttttgcgt
tcgtatgttgcgcgaacttatttaagaagaacaaagcaagatttcgaactaatttgttat
ctattagaacgagatatttatatgacaccagaccaagcagtagagtttggtcttatcgac
gaaatcggcgtagaaggactcggtttttcagatacattagatacattgtttattcatgac
gatgctgatgcccatgataatagttttgcgaatcgtgctttaatgggttctaatatgcag
cgtcaagcagttccacttgttcaacctgagaagtgtattgtcggaactggattggagggt
caagcagctctagattcaggaagtgtagctatagctaagcaagggggaaaaataaagtat
attgatggtgaaaatatcaccataacttcatctgttgctcgaaacaatatagaaacagaa
ttgattctatatcaacgttctaatagcgatacttgtatgcatcaaaaaccccgagttcgc
caaggggagtatgtaaagaggggacaaattatagcagacagtgcagctacagcaggggga
gaactttctttgggaaaaaacatcttagtggcctatatgccatgggaaggatacaatttt
gaagatgcaatacttattagtgaacgtctggtatatcaagacatttttacttctttccag
atcgtaagatacgaaattggagtttattttacgaaccagggccctgaagtaataactaga
gaaatacctcatttagatgcttacttacttcgtcatctggacgaaaacggccttgtaatg
ataggatcttggatagaaacaggtgatgtattagtaggtaaattgatactggaagcagaa
gaagactcactattaaatactccagaaggaaaattattacaagctttatttgatattaag
gcacctactggaaaagaaaattgttttagagtccctaaaggtgtaaaaggtcgagttatc
gatgtgagatgctttcaggagttcgaggaagacgattatctcggcgatattgtagaaaaa
gttcatgtatatattttacaaaaacgtaaaatacaagtaggcgataaagtagctggaagg
catggtaataaaggtattatttcaaaaattttgcccaggcaagatatgccttatttacag
aatggaacaccagtggacatggtattaaatccattaggggtaccttcacgaatgaatgta
ggacagatctttgaatgtttgcttggtttagcaggaaaactaatgaacaaacattacaga
ctagcaccttttgacgaaaggtacgagcgagaagcttctagaaaactagtcttctctgag
ctttataaagctagcgagcaaacagctaatccatgggtatttgaacctgatcatcctgga
aaacatagattaattgatggaagaacaggaaaggtatttgaacaacctgttacaatagga
atagcttatatatcgaaattgtgccatcaagttgatgacaaaattcatgcacgttccagt
ggaccttatacactggttacacaacaacctctcaaaggaaaatcccaccgaggagggcaa
cgagtaggagaaatggaagtttgggctttacaaggttttggtgttgcttatatcttacac
gagatgcttactttaaaatctgaccatatggatactcgtgaaaaaatatttggtgccatt
ttcaacggagaaccaatgcctaaacctagcactcctacagaatctttccgattgctcagt
agagaactacgatctttagctctagaattgaatcatactattctatctgagatagacttt
cagatagataagaaggaagtttga
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