Cryptomeria japonica (Japanese cedar): 131074644
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Entry
131074644 CDS
T10556
Name
(RefSeq) uncharacterized protein LOC131074644 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131074644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjf03019
]
131074644
Messenger RNA biogenesis [BR:
cjf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131074644
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
131074644
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
131074644
NCBI-ProteinID:
XP_057867284
LinkDB
All DBs
Position
4:386790172..386836886
Genome browser
AA seq
2456 aa
AA seq
DB search
MALPLPLAQTSTNFNFNINMVSTLASQIGFLLRNVNEANYRSVAYQLTRFAGYGLDCSIV
LLQSCLDQVNLRDGDVQNMQLKLELLSVVVRHLVHQPNFSTVFCQAVQNTHITEDILGDL
SKALHLSLPEQLGLGFALADSDNINRSHEGQNFCKAKIMELCQNPTSGISEDLIERILLF
LHQSEGLSKHVPSFLQALSLLEPKAQMSLLLKPLFKNDVNAVNTSSECRSFQSCASNLQV
SDTVLTQLEEATDVASIMEELGYGCTIDVAHCKDVLSLFCPLTEKTVSKIISTIVRTHTG
LVDAHGTHGTFYSSLFSSSTTDCSWLTSWNIDVLLDSIKELAPDISWVSVMEALDHEGFY
LPDQQSFSMLMSTYAKICQDPFPVQTVCGNLWKNDEGQLSFLRFAVSASPEILTFANSRR
LQAPLEGPHGNKLPFGSMNQAWLSVDLVEVLCHLAEMGHGTVVHSMFEYPINHCPETLLV
VVAQVKTNFNILQHDIFSTLFPLCLGGSLNSSIILNQLWHINPHIVLWSMMDIHSKDPSS
ISKIADACQEIKALPLVLDMTPFSFAIELAAFASRREYLNLETWLNDNLSTHRDTLFEAC
LKFLRERTLFEASNDALGNPVQRSGPIVNLSLDTTASFFKVLQSNVGQLESRDLVEEMKR
LHSAMVRVNPRLLSVGAAEQSPSEVFAADIDEESNSYFQKIYVGQMTIDALVQMLACFKE
SSEKREQEIFACMIQSLFDEYRFFTRYPERELRMTGILFGSIIKHQIVSSLTLGIALRCV
LDALRKPLDSKMFSFGFTALEQFVDRLVEWPQYCNHILQISHVRDAHGELIEFIERALAR
SSSSHPEPTVGNPPSSDQHQSSISLPASDTIENSDATWQSIVGPTTPQSALAQRQQGIPA
SYVRQSSLLATGQTISVNGQIESGPGLKSSQVVPSQQAGSGSTSSTVSNQGFLCNSRGST
VPVTRQTLNSFGHALNIETLVAAAEKRDAAIEAPGPEVQDKIAFMINNISTTNLEAKSKE
FLEILKDQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKINSKLLHKEIIKATYENCKVLL
KSELIKSSSEERSLLKNLGSWLGKLTIGRNQALRAREIDPKLLIIEAYEKGLMIAVIPFT
SKILEPCQSSLAYQPPNPWTMGILSLLAEIYALPNLKMNLRFDIEVLFKNLGVETKDVKP
TQLLKGRAREIEGNPDFSNKDLGASQQVGTEHTTGTVSSISQVELQPEVSASHPSAPHAP
VLPQFSAALHLSSSTGGEDEKVSTLAGMPDRMPAGLGLSHATPAQSPFPVSQFSIPISNI
GAYVVVNQKLNALGQQLPFQRIVPVAMERAIREIISPVVERSVTIACMTSRELVTKDYAM
ESEESRIRESANKMVASLAGSLAHVTCKEPLRVAMANHLRSLLQQLNVVGEVLEQAVQLV
TNDNLDLGCAVIEQAATEKALRDLEDVIGPALSSRRKQRETLGPAFYDATVYSKNLARLP
EALRPKPGRLSSAQQRVYEDFARLPWQNQPTQSSPVAPSGSSNSNAGSLGSAFSRVVYGS
ASAQGSSSGYNSTQTTSGLGVVAQPLEQSSEELDSRAASPHSASGSQIAMADGGLRQIPD
MLVSSSLTTNSSAIAEGNILENSSSTKESGPMVRPSTPTSAIERLSSSGLEPSLNTGEAL
DKYELISQKLEAAISMGASEQELQGLVSEIPEIILQCISRDEAALAIAQKVFKRLYENAS
NSLHVSTHMTILSSIRDVCKRVVKELTSWVIYSDEERKFNKDITVGLIRSELINLTEYNI
HLAKLVDGGRNASATEFAIFLVQTCVVQEPGVSVSELFNLIEALGKVAQRPGSPESLLQL
IEDVKNMSLSVASQTASLAGKEEKARQSRDKKATLGRAGTTRDDSKIINRDGGFVDPPGF
REQVAHLFEEWARICDSPGVNDKAYAVYMSHLQQTGMLKGDDVSDRFFRVLTELAVGYCL
VSEVSVPSSIPLSSQQIMQGLSFTPIDMYTKLVVLLVKYYAVDSGMTKVNLLNKVLAVTV
RVIQRDAEEKKNAFHPRPYFRLFVNWLMDFNSPDPALDASNFQVLTAFANAFHSLQPLRV
PGWSFAWLELICHRSFMPKLLLSNNQKGWPFFQRLLVDLFKFMEPYLRNAELSDPVRLLY
KGTLRVLLVLLHDFSEFLCDYHFSFCDVIPPSCIQMRNLILSAFPRNMRLPDPFTPNLKV
DLLPEISQSPRILSEVDAALKSRQMKTEVDEYLKTRQPMSMLIVDMKNRVLLPQHEAASA
GTRYNVPLINSLVLYVGMQQLQSKSTPQQLAVPTAPIHSAPMDIFQRLILDLDTEGRYLF
LNAVANQLRYPNNHTHYFSCVLLYLFAEANQEMIQEQITRVLLERLIVNRPHPWGLLITF
IELIKNPRYDFWNRGFTRCAPEIEKLFESVARSCMGPALKPVESDISSSISADSNH
NT seq
7371 nt
NT seq
+upstream
nt +downstream
nt
atggcactgcctctgccactggcgcagacgagtacaaatttcaacttcaatatcaatatg
gtctcaacccttgctagccaaattgggtttttgcttcgcaatgtaaatgaggctaattat
cgctccgtcgcctaccaactaactcgctttgcaggatatgggttagattgtagcattgtt
ttgctgcagagttgcttggatcaggtaaatttgcgtgatggagatgtgcagaacatgcag
ttaaagttggaactcctttctgttgtggtgagacatttggtgcaccaaccaaactttagt
acagttttttgtcaagctgtacaaaatactcatatcactgaagatatacttggagatttg
tcaaaggccttgcatttatcattacctgagcagcttggtttgggatttgccctagcagat
tcagacaacataaatagaagccatgaaggccaaaatttttgcaaggctaaaattatggaa
ctgtgccagaatcctacatctggaatctctgaagatcttattgagcggattttgttattc
cttcatcagagtgaagggctatcaaagcatgtaccttcttttcttcaggccttgtcattg
ttggagcccaaagctcagatgtcactcctactgaaaccactattcaaaaatgatgtaaat
gctgtcaacacttcgagtgaatgcaggagttttcaatcttgtgcatccaatttgcaagtg
tcggatactgttttgacacagttggaagaggctactgatgttgcaagcataatggaggag
cttggatatggctgtacaatagatgttgcacattgcaaagatgttttgtcattgttttgt
ccacttacagagaagactgtttccaagataatcagtactattgttcgcactcacacgggc
cttgttgatgctcatggcacacatggaacattttattcttcactttttagtagttccaca
actgattgttcatggttaacctcctggaatatagatgttcttttagattctatcaaggaa
ctggccccagatattagttgggtttcagtaatggaggctttagatcatgaagggttttat
ttaccagatcagcagtcgttctcaatgctgatgtcgacatatgcaaaaatttgccaggat
ccatttcctgttcagacagtttgtggaaatttatggaagaatgatgaaggccagctatcc
ttcttgagatttgctgtatctgcatcacctgaaattctcacatttgcaaattcaaggagg
ctacaggcacccttggaaggtccacatggaaataaacttccatttggtagtatgaatcag
gcatggttgtctgttgatctggtagaagtattgtgccatttggcagagatggggcatggg
actgtcgtgcattcaatgttcgagtatcctattaatcactgtccagagactttactcgtt
gttgttgcccaagtcaaaaccaacttcaacattcttcagcatgacatattttctactctt
tttcccttatgtcttgggggaagtcttaatagcagcattatacttaaccaactctggcat
atcaatcctcacattgttctctggagtatgatggatatccattcaaaagatcctagcagt
atctcaaaaattgcagacgcatgccaagagataaaggcattgcctcttgtgctggacatg
acacccttttcttttgcaattgaacttgcggcttttgcatctagaagggagtatttgaat
ttggaaacatggctaaatgacaacttaagcactcatagggataccttatttgaggcgtgt
ctgaagttcttgagagaaagaactttatttgaagcatcaaatgatgcactgggaaatcca
gtccaacgttctggaccaatagtcaatctatctttggatacaactgcaagtttcttcaag
gttcttcagtctaatgttggtcaattggagtcccgagatcttgtggaagaaatgaaacga
ttacattctgcaatggtccgtgtgaatccccgattattaagtgttggggctgcagaacag
tcaccatctgaagtctttgctgctgatattgatgaagagtcaaattcttattttcagaaa
atctatgttgggcagatgactattgatgctctagtgcaaatgcttgcatgtttcaaggag
tcttctgagaaaagggagcaagaaatttttgcttgcatgatacagagcctgtttgatgaa
taccgttttttcacaaggtatccggagagggagttgagaatgacaggcattctttttggc
tcaattataaagcaccagattgtctcttctcttacgcttggcatagcactacgttgtgtc
cttgatgctctgcgtaaacctttggactctaagatgttttcatttggcttcacagctctg
gaacaatttgttgatcgactagtagaatggccacagtattgcaatcatatcttgcagata
tcacatgtgcgggatgctcatggagagttaattgaatttatagaaagggccttagcacgt
agttcatctagccacccagaaccaacagtagggaatcctccctcatcagaccaacaccag
agttcaatttctttgccagcttctgatacaattgagaattctgatgctacatggcagtca
attgtgggtccgacaacaccacaatctgcattggcacagagacagcagggaattccagca
agctatgttagacaatcttcgcttctggcaactggacagacaatttcagtcaatggtcag
attgaatctggtccgggattgaagtcttctcaagtagtaccttctcagcaagctggtagt
ggatcaacatcatctacggtatctaatcagggttttttgtgcaattctcgaggctcaaca
gttccagttaccagacaaactttgaacagctttggacatgctcttaacattgaaacatta
gtggctgctgctgaaaaacgagatgcagctattgaggcacctggcccagaagttcaggat
aagatagcttttatgattaataatatttcaacaaccaacttggaagccaaatcgaaggag
tttttggagattttgaaagatcaatactatccatggtttgcacagtatatggtgatgaaa
agggctagtattgaacctaattttcatgacttgtatttgaagtttttggacaagatcaat
tcgaaattactgcataaagaaatcatcaaagctacttacgaaaattgcaaggttctttta
aagtcggagcttattaaatctagttcagaagaacgatctttactcaaaaatctgggaagt
tggcttgggaaacttactattggtagaaaccaggcgttgcgggctcgggaaattgatcct
aaacttttgatcattgaggcatatgaaaaagggctgatgattgcagtaattccatttaca
tcaaagattttagaaccctgtcaatcaagtcttgcatatcagcctcccaacccttggaca
atgggtatcctcagtttacttgctgaaatctatgcattgccgaatttgaagatgaatctt
agatttgatattgaggtactatttaaaaatttgggggtagaaacaaaggatgtcaaaccc
actcagcttctcaagggccgtgcacgagagattgaaggaaatcccgacttttccaataaa
gatctgggagcttctcaacaagttggcactgagcatacaacaggaacagtgtcttcaatt
agtcaggtagagctgcaacctgaagtttcagcttcacatcccagtgcccctcatgctcca
gttttacctcagttttctgccgcacttcatctttcatcaagtacaggaggagaggatgaa
aaagttagcacactagcgggtatgcctgaccgtatgccagctggtcttggattgtcacat
gccactccagctcaatctccattccctgttagtcagttttctatcccaatctcaaatatt
ggtgcatatgttgtggtcaatcaaaaactcaatgctcttggacagcaactaccgttccaa
aggattgttcctgtggcaatggagagagctattcgtgagatcatatctcctgttgtagaa
cgaagtgtcaccattgcatgcatgacatctcgtgaacttgtgacaaaggactatgctatg
gagtctgaagaaagtcgtatacgtgaatctgcaaacaaaatggtagcaagtcttgcaggg
agcttggcgcatgtaacttgcaaggaaccccttcgtgttgcgatggcaaatcatttgaga
agtttgctacaacaactaaatgttgtgggagaagttcttgagcaagctgtgcagcttgta
acaaatgataatctagatctgggttgtgctgtgatagaacaagctgcaacggaaaaggca
cttcgtgaccttgaagatgtcattggacctgcactttctagtagaaggaaacagagggaa
acacttgggcctgcattttatgatgctactgtgtactctaaaaatctagcgcgtttgcca
gaggctctccggccaaagcctggccgattatcttcagcccaacagcgggtttatgaggat
tttgcaagacttccttggcagaaccaacctactcagagttctccggtggcaccgagtggc
tcatccaattctaatgccggttctcttggatctgctttttctcgtgttgtttatggttct
gcttcggcacagggaagctcaagtggttacaattcaacacaaactacatcaggactgggt
gttgttgcccaaccactggaacaatcttctgaagaacttgactctcgtgctgcatcacct
catagtgcttctggtagtcaaattgctatggcagatggagggctgcgtcaaattccagat
atgttagtgtcaagttccctaactacaaacagtagtgctatagctgaggggaatattctg
gagaattctagttctacaaaggagtctggaccgatggtacgaccttcaactccaacttca
gctatagaacgtcttagttcttctggactagagccctctcttaacacaggagaagcactg
gataaatatgaacttatatctcaaaagttggaagcagcgatctcaatgggtgctagtgaa
caggaactccagggccttgtctcagaaatacctgagattatcctgcaatgtataagtaga
gacgaggcagctctggcgatagcacaaaaggtttttaagagattatatgagaatgcatca
aacagtttacacgtttcaacccatatgaccattttgtcttctatccgcgatgtttgcaaa
cgtgtggtgaaggaactgacaagctgggtgatttactcagatgaggaacgtaaattcaac
aaggatataactgttggtcttatacgttctgaacttattaaccttacagagtacaacatc
catcttgcaaaacttgtggatgggggacggaatgcttcggctacagaatttgctatattt
cttgttcaaacttgtgtggttcaagagccaggcgtcagtgtttctgagcttttcaatctt
attgaggctttggggaaggtggcacagaggccaggttcacctgagtctttgctacaattg
attgaagatgtgaagaacatgtcattaagtgtggcctcccaaactgcatctttggctggc
aaagaagagaaagctagacaatccagagataaaaaggctacccttggtcgtgctgggaca
actcgggatgacagcaaaatcattaatcgtgatggtgggtttgttgaccctccaggtttt
cgcgaacaggttgcacacctatttgaggaatgggctcgcatatgtgattctcctggagta
aatgataaagcatatgcagtctacatgtcacacttgcagcaaacagggatgttgaaagga
gatgatgtttctgatcgattttttcgtgttttgacggagctcgctgttggatattgtttg
gtttctgaagtatcagttcccagttcaattccactttcttcccaacaaataatgcaaggc
ctatcttttactccaattgatatgtatacaaaacttgtagttttgttggttaagtattat
gcagtggactcaggaatgactaaagttaatcttttgaacaaggtgcttgcagtaactgtg
cgtgtcattcaaagggatgccgaagagaaaaagaatgcatttcatcctagaccttatttt
cggttgtttgtgaactggcttatggattttaactcccctgatccagctcttgatgcgagt
aattttcaggtactcactgcatttgcaaatgctttccattcactgcaaccattaagagta
cctggttggagttttgcttggcttgaactgatctgccatcgcagttttatgccaaagtta
ctcttaagcaacaatcaaaagggctggccatttttccaacgtttacttgtggatttgttc
aagtttatggagccttacctgagaaatgctgagcttagtgatccggtccgattgctgtac
aaaggcacccttagagtgttgttggttcttcttcatgatttttcagagtttctatgcgat
taccatttcagcttttgcgatgttattcctcctagttgcatacagatgcggaatctcatt
cttagtgcctttccacgcaacatgaggctcccagatccatttactcccaacttaaaggtt
gaccttcttcctgaaatcagccagtcaccaagaatattatctgaggtagatgctgcactg
aagagtagacagatgaaaacagaggttgatgaatatcttaagacaaggcaaccaatgtcc
atgttaatagtggatatgaaaaaccgggtcttgcttccacaacatgaagctgcatctgct
ggaactcgttataatgttcctttaatcaattctctggttctatatgtaggaatgcagcaa
ttgcagagcaaaagtactcctcagcaacttgctgttccaacggcaccgatacatagtgcc
cctatggacattttccagaggttgatattagatctagatacagagggtcgatacttgttt
cttaatgcagttgccaaccagctgcgttacccaaataaccatacacattacttttcttgt
gtattgctctatctttttgcagaagcaaatcaggaaatgatccaagaacaaataacaagg
gtattgttggaacgtttgattgtaaatagacctcatccttgggggttacttatcactttc
attgaacttataaagaatcctcgttatgacttctggaatcgtggatttacacgatgtgcg
cctgagatagagaaattatttgagtcagttgctcgctcttgcatgggacctgctttgaag
cctgtggaaagcgacatttcatccagtatatcagcagatagcaaccattga
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integrated database retrieval system
