Corynebacterium jeikeium: jk1317
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Entry
jk1317 CDS
T00255
Symbol
lig
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cjk
Corynebacterium jeikeium
Pathway
cjk03030
DNA replication
cjk03410
Base excision repair
cjk03420
Nucleotide excision repair
cjk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cjk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
jk1317 (lig)
03410 Base excision repair
jk1317 (lig)
03420 Nucleotide excision repair
jk1317 (lig)
03430 Mismatch repair
jk1317 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cjk03032
]
jk1317 (lig)
03400 DNA repair and recombination proteins [BR:
cjk03400
]
jk1317 (lig)
Enzymes [BR:
cjk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
jk1317 (lig)
DNA replication proteins [BR:
cjk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
jk1317 (lig)
DNA repair and recombination proteins [BR:
cjk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
jk1317 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
jk1317 (lig)
MMR (mismatch excision repair)
DNA ligase
jk1317 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
jk1317 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
Surface_antigen
OrfB_Zn_ribbon
zinc_ribbon_2
Motif
Other DBs
NCBI-ProteinID:
CAI37489
UniProt:
Q4JUL8
LinkDB
All DBs
Position
1559656..1561743
Genome browser
AA seq
695 aa
AA seq
DB search
MSTQSRWQELADQVRHHRQLYYYGEPEISDADFDALLQELKDLEQAHPEVVTGASPTEEV
APAPPTSSPFRNVDHREQMLSLDNVFDTEQLAGWLDRTPAKTYLTELKIDGASINLLYID
GQLELALTRGDGTTGEDITHNARTLDDIPDTLHGTDEFPVPELVEIRGEVFIDVEDFAAM
NAQRQAEGLKMFANPRNAAAGAMRQKNSADTAKRPLKLICHGIGAREGFSPASQHDAYRA
IAAWGLPVSPYTKQVHSAKEVQQQVEYWGNHRHDAAHEMDGLVVKVDSLEEQLELGHTSR
APRWAIAYKYPPEEAMTTLHNIRVGIGRTGRATPYAVMAPKYVAGSTVSMATLHNPTEAH
RKGVLLGDTITIRKAGEVIPEVLGPVEDKRTGAERPFLFSTFCPECGTRLAPSKVGDADW
RCPNTQYCPGQLHTRLTYLASRKAFDIDALGEKGAYDLIHSGVLADESELFDLRAEDLEK
TSSYATKAGKLNKSGETLLEKLQSAKEADLWRVLVALSIRHVGPTAAKALAKHFESVEDI
ASASAEEMAGIDGVAETIAESISDWFTVDWHRRIVDRWAAAGVRMRREAGNVPGAADGVD
SALLEGLTIVVTGSLEDFDRTAAKEAIEARGGKAAGSVSKKTDFLVAGEKAGSKLKKAED
LGVPVLDEAAFKELLENGAPSSGDDASTSADSVDD
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
gtgagtactcaatcccgctggcaagaactcgctgaccaggtgcgccaccaccggcagctc
tactactacggcgaaccggagatctcggacgcggacttcgacgccctgctgcaggagctc
aaagacctcgagcaggcccacccggaggtcgtcaccggcgcgtctcccaccgaggaagtc
gcgcccgccccgcccaccagcagtccgttccgcaacgtcgaccaccgcgagcagatgctc
agcctggacaacgtctttgatactgagcaactcgccggctggctggaccgcacccccgcg
aagacatacctgacggaactgaagatcgacggggcgtcaataaacctcctctatatcgac
ggccagctggaactcgcgctgacccgcggcgacggcacgacgggcgaggacatcacccac
aacgcgcggaccctcgacgacatcccggataccctccacggcaccgatgaattccccgtc
cccgaactggtagagattcgcggcgaggtattcatcgacgtcgaggactttgccgccatg
aacgcccagcgccaggccgaggggctgaaaatgttcgccaaccctcgcaacgccgctgcc
ggcgcgatgcggcaaaagaattccgcggacacggccaaacgcccgctgaagttgatctgc
cacggtatcggcgcgcgcgagggcttctcccccgcttcccagcacgatgcgtaccgcgcg
attgccgcgtgggggctgccggttagcccgtataccaagcaggttcactctgccaaggag
gtccagcagcaggtcgagtactggggaaaccaccggcacgacgcggcgcacgagatggac
gggctggtcgtcaaggtcgattccctggaagagcagctggagctgggccacaccagccgt
gccccacgctgggcgatcgcctacaagtacccgccggaggaggcgatgaccacgctgcac
aacatccgcgtcggcattggccgcacgggtcgcgccacaccttatgccgtcatggcgccg
aagtacgtcgcggggtccacggtctcgatggccacgctgcacaacccgacggaggcccac
cgcaagggcgtattgctgggcgatacgatcaccattcgtaaggccggcgaggtcatcccg
gaggtgttgggcccggtcgaagacaagcgcacgggcgcggagcggcctttcctattctcg
acgttctgccccgagtgcggcacccgtttggctccttcgaaggttggtgacgccgactgg
cgttgccccaacactcaatactgtcccggccagttgcatacccgcttgacgtacctggct
tcccgcaaggcgtttgatatcgacgctttgggcgaaaagggtgcttatgatctgatccat
tccggtgtgttggccgacgagtcggagctgttcgacttgcgcgcagaggatctggaaaag
accagttcttatgcgacgaaggccgggaagctgaataaatctggcgagaccctgctggag
aagctgcagtctgcgaaggaggcggacctgtggcgggtgctggttgcgctgtcgatccgg
cacgtgggtccgactgcggcgaaggctttggcgaagcatttcgagtccgtggaggacatc
gcctctgcttccgcggaggagatggccggcatcgacggtgtggccgagacgatcgcggag
tcgatctcggattggttcacggtggattggcaccgtcggatcgtggaccgctgggcggca
gctggcgtgcggatgcgccgggaggccgggaacgttcccggtgcggcagacggcgtggac
tctgcgctgctggagggcctgacgatcgtggtcaccggctcgttggaggacttcgaccgg
acggcggcgaaggaggccatcgaggctcgtggcggcaaggcggcgggcagcgtgtcaaag
aagacggacttcctggtggcgggcgaaaaggctggctccaagttgaagaaggctgaggac
ctgggcgtgcccgtgctggatgaggcagccttcaaggaactgctggaaaatggcgcccca
agttccggcgatgatgcaagcaccagcgccgatagtgtggacgactag
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