Coturnix japonica (Japanese quail): 107319059
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Entry
107319059 CDS
T04297
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cjo
Coturnix japonica (Japanese quail)
Pathway
cjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107319059 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjo03019
]
107319059 (CNOT1)
Messenger RNA biogenesis [BR:
cjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107319059 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107319059 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
107319059
NCBI-ProteinID:
XP_015729063
LinkDB
All DBs
Position
11:1152650..1200556
Genome browser
AA seq
2384 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHTVTTDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLSQPTFQQSKMKPSDLSQVWPEANQNF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDLKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQQAWATDDVAQIYDKCMTEL
EQHLQSIPHTLAMNPQAQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADAD
LLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNM
QQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSR
GNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREW
VNLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYR
AQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVG
VLLQDHEVRQGEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAP
GFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILY
KGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKV
DMLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNI
QLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIAN
QLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKN
PAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7155 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcacattgtgaacaggcacggt
cccgaggcagacaggcatttactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagactcaatttctgatccaagagtgtgcgtcg
ttgattacgaaaccaaactttatctcgacgctgtcctacgccattgacaatccattgcac
tatcagaagagtctaaagccttcaccccatttatttgcccaattgagtaaggtcatcaaa
ttaagtaaagttcaagaggtgatatttggtctcgctttactgaattctttcagctcagat
ctacgaggttttgctgcccagtttatcaaacagaaactcccagatcttttacgctcttac
attgacgcggacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcaccttctcctctcccatctcctctttgggcagaagggagcctttggggtgggacag
gaacagattgacgctttcctcaaaacattacgtagagattttccccaggagcgttgccct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaacaatgatggagagttctctggcagacttcatgcaa
gaagttggctatggcttttgtacaagtgttgaagaatgtcgcaacataatcatgcagttt
ggagttcgggaggtgacggctgcccaggttgccagggtgctggggatgatggctcgaacc
cattcggggttgacggatggtattccattacaatctatttcggctcctggcagtgggatt
tggagtgatggcaaagataaaagtgatggagcacaagcccatacctggaatgtggaggtc
ttaattgatgttcttaaagagctgaatcctagcctggatttcaaagtagtaacctatgaa
ttggaccacccaggatttcagattcgtgacagcaaaggcctgcatattgtggtgtttggc
atccagagggggctaggcatggaagtctttccagttaacgccatatacagaccttggaag
catgcagagggccagctctccttcattcaacattcccttataaacccggacatcttttgt
tttgctgactacccttgtcatactgttactacagacatcctgaaagcaccaccagaagat
gacaacagagaaattgctacatggaagagcctggatttgattgaatctctgttacggttg
gcagaagtgggacagtatgagcaggttaagcagctcttcagttttcccatcaagcattgc
ccagatatgttggtattggccttattgcagatcaacacttcttggcataccttgcgccat
gaactcatctccacgctcatgccgatcttccttggcaaccatcccaactctgccatcatt
ttgcactatgcatggcatgggcagggtcagtctccttcgattcgccaacttatcatgcat
gcaatggcagaatggtacatgagaggggagcagtatgaccaggcaaaattgtcacgtatt
cttgatgtggcacaagacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgagaatacctcaaacttgacaaatgg
ctcacagacaaaattcgggagcatggggagcccttcatccaagcctgcatgaccttctta
aagagaagatgtccatctatcctaggtggccttgctccagaaaaagatcaacccaaaagt
gctcagcttcctccagaaaccttggcaactatgttggcatgcctgcaggcttgcgctggg
agtgtttctcaggagctgtcagagaccatcctcaccatggtagccaactgcagtaatgtc
atgaacaaggccaggcagccaccacctggagtcatgcccaaaggccgcccacctagtgca
agcagcttggatgccatctctcctgtgcagatcgactcacttgcaggaatggcatctctg
agtttaggtggctcagctgctcctcacacccagagcatgcaaggcttccctccaaacttg
ggctctgcattcagtactcctcagtcaccagcaaaagcatttccccctctttccacccaa
aaccagacaacgggtttcagtggcattggaggactctcttcacagcttccagtaggtggt
cttactacgggtagcctgactggcataggaactggagccctgggccttcctgcagtgaac
aatgacccattcgtgcaaaggaagctgagcacatctggactgagccagcctacgttccag
cagagtaagatgaaaccttctgatttatctcaggtgtggccagaggctaatcagaacttt
agcaaagaaatagatgatgaggcaaacagctacttccagcgtatctataaccatccacca
catccaaccatgtctgtagatgaggtcttggaaatgctgcagaggtttaaggactccaac
attaaacgggaacgagaagtgtttaactgtatgctgaggaacttgtttgaagagtaccgt
ttctttccccagtacccagacaaagagctgcacatcacagcctgcctctttggtgggata
atagagaaaggactggttacttacatggccctgggcctggcccttcgctacgttcttgaa
gccttacgaaagccttttgcatccaaaatgtactattttggtattgctgcactagatagg
tttaaaaatagactgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttccctcatcacttgcaggagtacatagaatacggccagcagtctagagat
cctcctgtgaaaatgcagggttcaatcaccacccctggaagtattgcacttgcccaggct
caggcccaggcccaggttccagcaaaagctcctcttgctggccaagtcagcactatagtt
accacctcgaccaccaccactgttgcaaaaaccatcactatcactcggccaactggagtc
agcttcaagaaggatgtgccgccttccattaatactaccaacatcgatacactgttagta
gcaacagatcaaactgagagaattgtggaacctccagagaacgtccaggaaaaaattgct
ttcatcttcaataatctgtcacagtcaaacatgacacagaaggttgaagaactgaaggaa
acagtgaaagaagagttcatgccttgggtatcacagtatctcgtgatgaagagagtcagt
attgagccaaattttcacagcttatattcaaacttcctcgacactcttaagaatccagaa
tttaataaaatggttctgaatgagacttacagaaatatcaaggtgctactgacatcagat
aaggctgcagccaacttctctgaccgttccttgttgaagaaccttggtcactggctggga
atgattacactggctaaaaataagcccatcttgcacacagatttggatgtgaagtcacta
ctactggaagcgtacgttaagggacagcaggaattgctttatgtagtaccatttgttgcc
aaagtcttagaatccagtgtcaggagtgtggttttcaggcctccaaacccatggacaatg
gctattatgaatgttttagctgagctgcatcaagaacatgatctaaaattgaatctgaag
tttgagatcgaagtgctctgcaagaatcttgcactggacatcaatgagctgaaacctggg
agcctcctgaaagataaggatcgtctgaaaaatctggatgagcagctgtctgctcctaag
aaagatgtgaagcagccagaagagctgccacccatcacaaccaccactgcttctacaact
ccagctaccagcaccacttgtacagccacagttcctccacagccccagtacagttatcat
gacatcaatgtgtattcgttaggaggtttggctccacatattaccttaaatccaacgatc
cccctgtttcaggcccacccccagctgaagcagtgcgtgcggcaggctatagagcgagcg
gtgcaggagctcgtccatcccgtggtcgatcggtccattaagattgccatgactacttgt
gagcagatagtcaggaaggactttgcactggattcggaggagtcacgaatgcgtgtggct
gcacaccacatgatgcggaacctgactgctgggatggccatgatcacctgcagggaacct
ttgctcatgagcatagctaccaacttgaagaacagttttgccactgcactgagggcagcc
tccccacagcagagggacatgatggagcaagcagctgcccagctggcacaggataactgt
gagctggcatgctgttttatccagaagacagctgtggaaaaagcaggccctgaaatggac
aagaggctggcaactgagtttgagctcagaaaacatgctagacaagagggtcgtcgatac
tgtgatcctgttgtgttaacttaccaagctgaacgcatgccagaacagatcaggttaaag
gttggaggtgtggacctaaaacagctggctgtttatgaagagtttgcacgtaacgtcccc
ggcttcttgcctaccaatgacttaactcagcctacaggattcttggctcaacctatgaag
cagcaagcttgggccacagatgatgtagcacaaatctatgacaaatgcatgacggaactg
gagcagcacctgcagtccattccccatactctggccatgaatcctcaagctcaagcatta
cgcagcctcctggaggctgtggtggtcgctcggaactcccgtgatgccattgctgcgctt
ggactgctgcagaaggctgtagagggcttactggatgccaccagtggggcagatgctgac
ctcctgcttcgctaccgtgagtgtcacctgctggtgctgaaggctctgcaggacggccgt
gcgtatggatctccatggtgtaacaagcagattactaggtgcctgattgaatgtagagat
gagtacaagtacaacgtggaagctgtggagctgttaatccgcaatcacctggttaacatg
cagcagtatgatcttcacctggcacagtcaatggagaacggcttgaactatatggctgtg
gcatttgccatgcagttggtgaagatccttcttgtggatgagagaagtgtcgcccatgta
acagaggcagatctgttccacaccatcgagacactcatgaggattaatgctcactccaga
gggaatgccccagaagggttacctcagctgatggaagtggtccgatcaaactacgaagca
atgatcgaccgtgctcacggaggtcccaatttcatgatgcattctggaatttcccaagct
tctgagtatgatgatccaccaggtctgagggagaaggcagaatacctgctgagggagtgg
gtgaacctctaccattcggctgcagcgggccgcgacagtaccaaagcgttctctgcgttt
gttggacaggtagagctattggaaagaaagatgcaccagcaagggatcctgaaaacagat
gacctgattacccgctttttccggctttgcactgaaatgtgtgttgaaatcagctatcgt
gctcaggctgagcaacagcacaaccctgctgccaaccccaccatgatccgagccaagtgc
taccacaatctggatgccttcgtgcggcttattgcactgctggtgaagcactctggagaa
gcaaccaacaccgttacgaagatcaacctgctgaacaaggttcttggtattgtggtggga
gttctcctgcaagaccatgaggttcggcagggcgagtttcagcagcttccttaccatcgc
attttcatcatgttgctgttggaattaaatgctcctgagcacgtgttggagaccatcaac
ttccagacactcacagctttctgtaacacatttcacatcctgaggcctacaaaagctcca
ggttttgtttatgcctggctggaactgatctcccatcggatatttattgcaagaatgctg
gcacatacaccacagcagaagggttggcctatgtatgcccagctgctgatcgatctcttc
aagtacttggctccttttctcagaaatgtggaactcaccaaacctatgcaaattctttac
aagggcactctgcgtgtgttgctggtcttgttgcatgatttcccagaatttctttgtgac
taccattatgggttctgtgatgtcatcccacctaactgtattcagctaaggaatttgatc
ctgagtgccttcccacggaacatgaggcttccagaccctttcacccccaatctaaaggtg
gacatgttgagtgaaattaatattgctccacgaatcctcaccaacttcactggagtgatg
ccacctcagttcaagaaagacttggattcctatctcaaaacccgttctccagtcactttt
ttgtctgacttgcgcagcaacttacaagtatcaaatgaacctggcaaccgctacaacatc
cagctgattaatgccctggtgctctacgtaggtactcaggctattgcgcacatccacaac
aaaggcagcacaccctccatgagcaccattacccactcagcacacatggacatcttccag
aatttggcagtggacctggacaccgaaggtcggtacctcttcttgaatgcaattgccaat
cagctccgataccccaacagtcatacccactacttcagctgcaccatgctttacctgttt
gcagaggccaacactgaggctatccaggagcagatcacgagggttctcttggaacgactg
attgtaaataggcctcatccctggggtctcctcattactttcatcgagctgataaaaaac
ccagcatttaagttctggaaccacgaatttgttcactgcgctccagaaattgagaagttg
ttccagtcagttgcacagtgctgcatggggcagaaacaagcccagcaagtaatggagggg
actggtgccagttag
DBGET
integrated database retrieval system
