Caldicellulosiruptor kronotskyensis: Calkro_1693
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Entry
Calkro_1693 CDS
T01357
Name
(GenBank) metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
ckn
Caldicellulosiruptor kronotskyensis
Pathway
ckn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ckn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Calkro_1693
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ckn03019
]
Calkro_1693
Messenger RNA biogenesis [BR:
ckn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Calkro_1693
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
MG280
KH_KhpA-B
Cas3_HD
KH_NusA_2nd
Cache_3-Cache_2
Endo_dU
Motif
Other DBs
NCBI-ProteinID:
ADQ46545
UniProt:
E4SFM0
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All DBs
Position
complement(1853678..1855243)
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AA seq
521 aa
AA seq
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MQKISETLKFVIIGAIVLVASMVAFFLGYLYRKKIAEKTIKSAEQEAQRIVEEAKKQAEA
YKKEATLLAKEEIHRARSEFDREVRERRAELQRFERRLIQKEEMLDKKMASVEEKEEQLN
QKLKDIQKLQEEIELLKQKEQEELQRISGLTQEEAKQIILKSVEQDVKHDVALMIKELEQ
QAKEEADKKAREIIATAIQRYSSDYVAENTVSVVTLPNDEMKGRIIGREGRNIKTFETVT
GIDLIIDDTPEAVILSGFDPIRREIAKLTLEKLILDGRIHPARIEEMYEKAKREVENKIR
EEGERVVFELGIHNLHPELIKLIGKLKYRTSYGQNVLAHSIEVANIAGIMAAELGLDQSI
AKRAGLLHDIGKAVDHEMEGSHALIGYELAKKYKETNPDVLEAIGGHHGEMETRSIYNVL
IQAADSVSAARPGARRESLESYIKRLQKLEEIANSFDGVEKAYAIQAGREIRIMVKPDHV
SDDDIVIMAREIVKRIESELDYPGQIKVNVIREVRAVEYAK
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaaagattagtgagacattgaagtttgtaattattggagcaattgttttggtagca
tcaatggttgcctttttcttgggctatttatatagaaagaagattgcagaaaagaccata
aaaagtgctgaacaagaagcccaaagaattgttgaggaggccaaaaaacaggctgaggca
tacaaaaaggaggcaacactccttgccaaagaagagatacacagagcaaggagcgaattt
gacagagaggtaagagaacgaagagcagagctccagaggttcgaaagaagacttatccaa
aaagaagagatgcttgacaaaaagatggcttctgtagaagaaaaagaagagcagctcaat
cagaagctgaaagatattcaaaaacttcaagaggagattgaacttttaaaacaaaaagag
caggaagagctacaaagaatttctgggctcactcaggaagaagcaaaacaaattatactc
aagagtgttgagcaggatgtcaaacatgatgttgcactcatgataaaagagcttgaacag
caagcaaaagaagaggctgacaaaaaagccagagaaattattgctactgctatccagcgc
tattcgtcagactatgttgcagaaaacactgtatctgttgttacactgccaaatgatgaa
atgaaaggtagaatcataggtagagaaggaagaaacataaagacatttgagactgttaca
ggaattgaccttataattgacgacacccccgaggcagtaatattatcagggtttgacccg
ataaggcgtgagatagcaaaattgacgcttgaaaaactcattttagatgggcgaatacat
cctgcgcgaattgaagaaatgtacgaaaaagcaaaacgagaagttgaaaataagattcga
gaagaaggagaaagggttgtatttgagcttggaattcacaacttgcatccagaactcatt
aagctcataggaaaacttaagtacagaacaagctacggtcaaaatgttcttgcacattct
attgaggtagcaaatatagcaggtatcatggcagcagagctcggtcttgaccagagcatt
gcaaagcgtgcaggtcttttgcatgacattggcaaagcagttgaccatgaaatggaaggg
tcacatgccctgattggttatgagcttgctaaaaaatacaaggagacaaacccggatgtc
cttgaagcgattggtgggcatcacggtgagatggaaacaagatcaatttacaatgtgtta
attcaggctgctgactctgtttcagcggcacgaccaggagctcgaagagaatctcttgaa
tcttatatcaaaaggcttcagaaacttgaagagattgcgaattcttttgatggtgttgaa
aaggcttatgcaattcaggcaggaagagagataagaataatggtaaagcctgaccatgta
agtgacgatgatattgttataatggcaagagagatagtaaagagaattgaaagtgaactt
gattatccaggtcagataaaggtaaacgtaatcagagaagttcgagcagttgaatatgca
aaatga
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