Citrobacter koseri: CKO_03002
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Entry
CKO_03002 CDS
T00592
Name
(GenBank) hypothetical protein
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cko
Citrobacter koseri
Pathway
cko03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cko00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CKO_03002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cko03021
]
CKO_03002
03400 DNA repair and recombination proteins [BR:
cko03400
]
CKO_03002
Enzymes [BR:
cko01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CKO_03002
Transcription machinery [BR:
cko03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CKO_03002
DNA repair and recombination proteins [BR:
cko03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CKO_03002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
ABV14102
UniProt:
A8AKT9
LinkDB
All DBs
Position
complement(2782294..2786355)
Genome browser
AA seq
1353 aa
AA seq
DB search
MGRLVSELRNPMVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGL
EAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREA
PEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGK
VLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALQYTTEQILDLFFEKVI
FEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDIKHIEVPV
EYIAGKVASKDYVDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE
TVRIDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL
LRDEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLV
RVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRR
ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET
PYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQ
VDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVA
VDSGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMP
CVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFT
TIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTP
KGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIE
EMQLKQAKKDLSEELQILEAGLFSRIHAVLVSGGVEAEKLDKLPRDRWLELGLTDEEKQN
QLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGR
HGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKIN
AMLKQQQEVAKLREFIQRAYDLGADVRQKVDLNTFSDEEVLRLAENLRKGMPIATPVFDG
AKEAEIKELLKLGDLPTSGQITLFDGRTGEQFERSVTVGYMYMLKLNHLVDDKMHARSTG
SYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIV
DGNHQMEPGMPESFNVLLKEIRSLGINIELEDE
NT seq
4062 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgacttgtcagcgagctgaggaaccctatggtttactcctataccgagaaaaaa
cgtattcgtaaggattttggtaaacgtccacaagttctggatgtaccttatctcctttct
atccagcttgactcgtttcagaagtttatcgagcaagatcctgaagggcagtacggtctg
gaagctgcattccgttccgtgttcccgattcagagctacagcggtaattccgagctgcaa
tacgtcagctaccgccttggcgaaccggtgtttgacgttcaggaatgtcagatccgtggc
gtgacctattccgcaccgctgcgcgtaaaactgcgtctggtgatctacgagcgcgaagcg
ccggaaggcaccgtaaaagacattaaagaacaagaagtctacatgggcgaaattccgctc
atgaccgacaacggtactttcgttatcaacggtactgagcgtgttatcgtttcccagctg
catcgtagcccgggtgtcttcttcgacagcgataaaggtaaaactcactcttccggtaaa
gtattgtataacgcacgcatcattccttaccgtggttcatggctggacttcgagttcgat
ccgaaagacaacctgtttgtccgtatcgaccgtcgtcgtaaactgcctgcgactatcatt
ctgcgtgcactgcaatacaccactgagcagatcctggacctgttctttgagaaagtgatc
ttcgagatccgcgacaacaagttgcagatggaactggtgccggaacgcctgcgtggtgaa
accgcctcctttgacatcgaagccaacggcaaagtgtacgtcgaaaaaggtcgtcgcatt
actgcgcgccacattcgccagctggaaaaagacgatatcaaacatatcgaagttccggtt
gagtacatcgcgggtaaagtggcgtctaaagactacgttgacgaatcaactggcgagctg
atctgcgcagcgaacatggagctgagcctggatctgctggcgaagctgagccagtctggc
cacaagcgtatcgaaacgctgttcaccaacgatctggatcacggcccgtacatttctgaa
acggtacgtatcgacccgactaacgatcgtctgagcgcgctggtagaaatctaccgcatg
atgcgcccgggtgagccgccgactcgtgaagcggctgaaagcctgtttgagaacctgttc
ttctccgaagaccgctatgacctgtctgcggttggtcgtatgaagttcaaccgttctctg
ctgcgcgacgaaattgaaggttccggtatcctgagcaaagacgacatcattgacgtgatg
aagaagctcattgatatccgtaacggtaaaggcgaagtcgatgatatcgaccacctcggc
aaccgtcgtatccgttccgtaggcgaaatggcggaaaaccaattccgcgttggcctggtg
cgtgttgagcgtgcggtgaaagagcgtctgtctctgggcgatctggataccctgatgcct
caggacatgatcaacgccaaaccgatttccgcggcagtgaaagagttcttcggctccagc
cagctgtctcagtttatggaccagaacaacccgctgtctgagattacgcacaaacgtcgt
atctccgcactcggcccaggcggtctgacccgtgaacgcgcaggcttcgaagttcgagac
gtacacccgacccactacggtcgcgtatgtcctatcgaaacgcctgaaggtccgaacatc
ggtctgatcaactccctgtccgtgtatgcacagactaacgaatacggtttccttgagact
ccgtatcgtaaagtcaccgacggcgtggtgactgacgaaattcattacctgtctgctatc
gaagaaggtaactacgttatcgctcaggcgaactccaacctggatgacgaaggccacttt
gtagaagatctggttacctgccgtagcaaaggcgaatccagcttgttcagccgcgaccag
gttgactacatggacgtttccacccagcaggtggtttccgtcggtgcgtccctgatcccg
ttcctggaacacgatgacgccaaccgtgcattgatgggtgcgaacatgcaacgtcaggcg
gttccgactctgcgcgctgataagccgctggttggtaccggtatggaacgtgctgttgcc
gttgactccggtgtaactgcggttgctaaacgtggcggtactgttcagtacgtggatgcg
tcccgtatcgttatcaaagttaacgaagacgagatgtacccgggcgaagcaggcatcgac
atctacaacctgaccaaatacacccgctctaaccagaacacctgtatcaaccagatgccg
tgtgtttctctgggtgagccggttgagcgcggcgacgtgctggctgacggtccgtccacc
gacctcggtgaactggcgctgggtcagaacatgcgcgtagcgttcatgccgtggaacggc
tacaacttcgaagactccatcctcgtttccgagcgtgttgtccaggaagaccgtttcacc
accatccacattcaggaactggcctgtgtgtcccgtgacaccaagctggggccggaagag
attaccgctgatatcccgaacgtgggtgaagctgcgctctctaaactggatgaatccggt
atcgtttacatcggtgcggaagtgaccggcggcgacattctggttggtaaggtaacgccg
aaaggtgaaacccagctgacgccagaagagaaactgctgcgtgcgatcttcggtgagaaa
gcgtctgacgttaaagactcttctctgcgcgtaccaaacggtgtttccggtacggttatc
gacgttcaggtctttactcgcgatggcgtagaaaaagacaaacgtgcgctggaaatcgaa
gagatgcagctgaagcaggcgaagaaagacctgtctgaagaattgcagatcctcgaagct
ggcctgtttagccgtatccacgctgtgctggtttccggtggcgttgaagctgagaagctc
gacaaactgccgcgcgatcgctggctggaactgggcctgaccgacgaagagaaacaaaat
cagctggagcaactggctgagcagtacgacgaactgaaacacgagttcgagaaaaaactc
gaagcgaaacgccgcaaaatcactcagggcgacgatctggcaccgggcgtgctgaagatt
gttaaggtatatctggcggttaaacgccgtatccagcctggtgacaagatggcaggtcgt
cacggtaacaagggtgtaatttctaagatcaacccgatcgaagatatgccttacgatgaa
aacggcacgccggtagacatcgtactgaacccgctgggcgtaccgtctcgtatgaacatc
ggtcagattctggaaacccacctgggtatggctgcgaaaggtatcggcgataagatcaac
gccatgctgaaacagcagcaggaagtcgcgaaactgcgcgaattcatccagcgtgcgtac
gatctgggcgctgatgttcgtcagaaagttgacctgaataccttcagcgatgaagaagtt
ctgcgtctggctgaaaacctgcgcaaaggtatgccgatcgcaacgccggtgttcgacggt
gcgaaagaagcggaaattaaagagctgctgaaactgggtgacctgccgacttccggtcag
atcacgctgtttgacggccgtaccggtgaacagttcgagcgttcggtaaccgtaggttac
atgtacatgctgaaactgaaccacctggtcgacgacaaaatgcacgctcgttccaccggt
tcctacagcctggttactcagcagccgctgggtggtaaggcgcagttcggtggtcagcgc
ttcggggagatggaagtgtgggcgctggaagcatacggcgcagcatacaccttgcaggaa
atgctcaccgttaagtctgatgacgtgaatggccgtactaagatgtataagaacatcgtg
gacggcaaccatcagatggaaccgggcatgccggaatccttcaacgtattgttgaaagag
attcgttcgctgggtatcaacatcgaactggaagacgagtaa
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integrated database retrieval system
